Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq14694 105 8e-18 seq44403 102 9e-17 seq44856 93.3 5e-14 >seq14694 Length=1798513 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | ||||| ||||| || | |||||||||||||| | ||| | Sbjct 774096 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCT 774155 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||| ||||| || ||||| || || ||||| | Sbjct 774156 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACGGCGGCAAAGG 774215 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 774216 CCACCACACGTTCTCC 774231 Score = 100 bits (110), Expect = 3e-16 Identities = 113/150 (75%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTC---ATTACTCCCAT 18668 ||| |||||| ||||||| | ||||||||||||| | ||| || || || ||||| Sbjct 772101 TTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG---TTGAACTCGACATCACCCCCAT 772157 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | || ||||| | |||| || |||||||| || || ||||| |||| ||| ||| Sbjct 772158 CCTCTGGTATTCTCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATT 772217 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATT 18758 |||||| || ||||||||||||| ||| || Sbjct 772218 TTCCATGAAGTCAAATGGATTTTCTACTTT 772247 >seq44403 Length=740699 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | || || || | || || ||||| || || ||||| || ||| Sbjct 631766 TGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATGGAT 631707 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | ||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 631706 TCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAACTG 631647 Query 47448 TTTCTTACTCCATA 47461 |||||||| ||||| Sbjct 631646 TTTCTTACACCATA 631633 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| || ||| ||||||| ||||| || | || || Sbjct 617605 GTCCCAGCATTGAAGAGAGTAGGAGAGGCGTGAGTAAACCACTTCTCAGAAAGCAGGTTG 617546 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 ||||||||||| ||| ||| |||||| || || || || | |||||| | ||| ||| Sbjct 617545 TATGTTTCAATCGCAGCATCAATATCCTCTTTGTGAATCCCCACAGATACCCTCATCAAC 617486 Query 48720 ATATATTGAGGTCTTTCA 48737 |||| || ||||||||| Sbjct 617485 ATATGCTGTGGTCTTTCA 617468 >seq44856 Length=74269 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || || || || | ||||| ||||| || | |||||||| || ||||| || | Sbjct 50752 CCTCATCCCTGCTGATGAGCTCATTTGAAAAGGTGAGTCCAGGCATGAGGCCTCTCTTCT 50693 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||||| |||||| || ||||| ||||| | ||||| || || || || | Sbjct 50692 TCAGCCAGAATATAGCAGCAAACGACCCAGAGAAGAAAACGCCTTCCACAGCAGCGAAGG 50633 Query 19103 CAACTAGTCTTTCTCC 19118 | || | |||||| || Sbjct 50632 CCACCACTCTTTCCCC 50617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561270042327720