Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq14694 105 8e-18
seq44403 102 9e-17
seq44856 93.3 5e-14
>seq14694
Length=1798513
Score = 105 bits (116), Expect = 8e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||||||||| || || | ||||| ||||| || | |||||||||||||| | ||| |
Sbjct 774096 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCT 774155
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || ||||| || ||||| ||||| || ||||| || || ||||| |
Sbjct 774156 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACGGCGGCAAAGG 774215
Query 19103 CAACTAGTCTTTCTCC 19118
| || | | ||||||
Sbjct 774216 CCACCACACGTTCTCC 774231
Score = 100 bits (110), Expect = 3e-16
Identities = 113/150 (75%), Gaps = 6/150 (4%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTC---ATTACTCCCAT 18668
||| |||||| ||||||| | ||||||||||||| | ||| || || || |||||
Sbjct 772101 TTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG---TTGAACTCGACATCACCCCCAT 772157
Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728
| || ||||| | |||| || |||||||| || || ||||| |||| ||| |||
Sbjct 772158 CCTCTGGTATTCTCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATT 772217
Query 18729 TTCCATAAAATCAAATGGATTTTTTACATT 18758
|||||| || ||||||||||||| ||| ||
Sbjct 772218 TTCCATGAAGTCAAATGGATTTTCTACTTT 772247
>seq44403
Length=740699
Score = 102 bits (112), Expect = 9e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || | || || || | || || ||||| || || ||||| || |||
Sbjct 631766 TGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATGGAT 631707
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
|||||||| || | ||| ||||||||||| || |||||||| | |||| | ||| ||
Sbjct 631706 TCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAACTG 631647
Query 47448 TTTCTTACTCCATA 47461
|||||||| |||||
Sbjct 631646 TTTCTTACACCATA 631633
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659
|| || | ||| || | || ||||| || ||| ||||||| ||||| || | || ||
Sbjct 617605 GTCCCAGCATTGAAGAGAGTAGGAGAGGCGTGAGTAAACCACTTCTCAGAAAGCAGGTTG 617546
Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719
||||||||||| ||| ||| |||||| || || || || | |||||| | ||| |||
Sbjct 617545 TATGTTTCAATCGCAGCATCAATATCCTCTTTGTGAATCCCCACAGATACCCTCATCAAC 617486
Query 48720 ATATATTGAGGTCTTTCA 48737
|||| || |||||||||
Sbjct 617485 ATATGCTGTGGTCTTTCA 617468
>seq44856
Length=74269
Score = 93.3 bits (102), Expect = 5e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| || || || || | ||||| ||||| || | |||||||| || ||||| || |
Sbjct 50752 CCTCATCCCTGCTGATGAGCTCATTTGAAAAGGTGAGTCCAGGCATGAGGCCTCTCTTCT 50693
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||||| |||||| || ||||| ||||| | ||||| || || || || |
Sbjct 50692 TCAGCCAGAATATAGCAGCAAACGACCCAGAGAAGAAAACGCCTTCCACAGCAGCGAAGG 50633
Query 19103 CAACTAGTCTTTCTCC 19118
| || | |||||| ||
Sbjct 50632 CCACCACTCTTTCCCC 50617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561270042327720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |