Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq27438 159 3e-33 seq104799 132 4e-25 seq76224 125 6e-23 seq87143 120 2e-21 seq97228 105 5e-17 seq66285 89.7 4e-12 seq27390 87.8 1e-11 >seq27438 Length=395273 Score = 159 bits (176), Expect = 3e-33 Identities = 368/547 (67%), Gaps = 12/547 (2%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| || ||||| ||||||| || |||| || || || Sbjct 214081 GGCATTGATCTTGGCACCACTTACTCCTGTGTGGGTGTTTTTCAGCATGGAAAGGTGGAG 214140 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||||||||| || | ||| |||| || ||| |||||| |||| || || | Sbjct 214141 ATAATTGCCAATGACCAGGCGAACCGAACCACACCAAGCTATGTTGCTTTTACTGACAAA 214200 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACCAATACTA 550175 ||| || |||| ||| | | || |||| | || || || || ||||| || Sbjct 214201 GAATGACTAATTGGGGATACCTCGAAGAATCAGGTTGCAATG--AACCCCACCAACACAG 214258 Query 550176 TTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATA 550235 |||||||||| |||| | | |||||| | || ||| ||||||| ||||||| | |||| Sbjct 214259 TTTTTGATGCCAAACATCTGATTGGATGTAGGTTTGATGATTCTGTTGTTCAGTCTGATA 214318 Query 550236 TGAAGCATTGGCCTTTCCAAATTGTTAATGTT----TCTGGAAAACCTTATATTGAAGCT 550291 || |||| ||||| || | || |||| | | || | | | | ||| Sbjct 214319 TGTAGCACTGGCCCTTTATGGTGGTGAATGATGCAGACAGGCCAGGCCAAGGTCCAAGTA 214378 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCA-CCAGAACAAATTTCATCTATGGTTTTAAT 550350 | ||||| | ||| | ||| || || || | | || ||| ||||| |||| Sbjct 214379 GAGTACAAAGGA-GAGACAAAAAGTTTCCACCCGGAGGAGGTGTCCTCTGTGGTTCTAAT 214437 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATAA 550409 || ||| | ||| || || | | |||| |||| ||||| |||| || | | Sbjct 214438 AAAGATGGAGGAAATTGCAGAAGCCTATCTTGG-GAAGACGGTTACCAATGCTGTGGTCA 214496 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || |||| | || | ||| || || | ||||| || |||||||||||| ||||| Sbjct 214497 CAGTGTCAGCTTGCTTCAGTGATTCTCAGTGGCAAGCAACAAAAGATGCTGGAACTATTG 214556 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 |||| || ||||| ||| | |||||||||||||| ||||||||||| |||| ||||| Sbjct 214557 CTGGCCTCAATGTGCTTTGAATTATCAATGAACCAACTGCTGCTGCTATTGCTTATGGGT 214616 Query 550530 TTGATAA 550536 | ||||| Sbjct 214617 TAGATAA 214623 >seq104799 Length=2130 Score = 132 bits (146), Expect = 4e-25 Identities = 278/412 (67%), Gaps = 2/412 (0%) Strand=Plus/Minus Query 552180 TTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCC 552239 |||||||| ||| || | || | || |||| || ||||| |||||||| |||||||| Sbjct 2087 TTCAATGGAAAAGAACTGAAGAAGAGCATTAACCCTGATGAAGCTGTTGCTTATGGTGCA 2028 Query 552240 GCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTT 552299 || | || ||||| || || |||| | | | ||| || | || || | | || Sbjct 2027 GCTGTCCAGGCAGCCATACTGTCTGCAGACAAGTCTGAGAATGTTCAGGATTTGCTGCTC 1968 Query 552300 GTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTT 552359 | |||| |||||||| || |||||| | ||| | | ||| || | ||||||| || Sbjct 1967 TTGAATGTCACTCCTCTCTCCCTTGGTATTGAAGCTGCTGGTGGAGTCATGACTATCCTC 1908 Query 552360 ATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGAT 552419 ||| | | ||||| || || ||| || | | | || | || ||||| || Sbjct 1907 ATCAAGCGCAATACCACCATCCCTACCAAGCAGACACAGACGTTCACCACCTATTCTGAC 1848 Query 552420 AATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAAT 552479 || || ||| ||| ||||| | | |||||| ||||| | ||||| ||||| Sbjct 1847 AACCAGCCTGGTGTGCTNATTCAGGTGTATGAAGGTGAAAGGGCCATGACTAAGGATAAC 1788 Query 552480 AATCAACTTGGTA-CTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCA 552538 || | ||||| | |||| | ||| | || || ||||| || || | ||| || || || Sbjct 1787 AACCTGCTTGGAAACTTTGTACTTACA-GGCATACCTCCAGCACCCCATGGTGTTCCTCA 1729 Query 552539 AATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 |||||||| ||||| || || ||||||||||| || | ||||| ||||| Sbjct 1728 GATTGAAGTCACTTTTGACATTGATGCCAATGGCATCCTCAATGTTTCTGCT 1677 >seq76224 Length=91619 Score = 125 bits (138), Expect = 6e-23 Identities = 351/529 (66%), Gaps = 19/529 (4%) Strand=Plus/Minus Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123 |||||||| || || ||| |||| || ||| |||||| |||| || || || ||||| Sbjct 6489 GCCAATGACCAGGGGAACTGAACCACACCAAGCTATGTTGCTTTTACTGACACGGAACAA 6430 Query 550124 TTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATACTATTTTTG 550181 ||| |||| |||| || || |||| | || || || || | ||| | | ||||| Sbjct 6429 TTAATTGGGGATGNTGCCAAGAATCAGGTTGCAATG--AACCCCATCAACAGT--TTTTG 6374 Query 550182 ATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGC 550241 ||| |||| | | || ||| | | || ||||| | | ||||| | |||||||||| Sbjct 6373 ATGTCAAACATCTGATCGGACGTACGTTGGATGATGCTGTT-TTCAGTCTGATATGAAGC 6315 Query 550242 ATTGGCCT--TTCCAAATTGTT---AATGTTTCTGGAAAACCTTATATTGAAGCTACTCA 550296 | | || | | ||| || |||| | | || | || | | ||| | Sbjct 6314 ACTAGCTTGGTGGTGAATGGTGGTGAATGATGCAGGCAGGCCCAAGGTCCAAGTAGAGTA 6255 Query 550297 TGAAGGATCTGTTAAACAATTTTC--ACCAGAACAAATTTCATCTATGGTTTTAATGAAA 550354 ||||| | | | || |||| ||||| | | || ||||||||| | ||||| Sbjct 6254 AAAAGGA---GAGACAAAAGTTTCTANCCAGAGGAGGTGTCTTCTATGGTTCTGATGAAG 6198 Query 550355 ATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAG-TTACGGATGCAGTAATAACTGT 550413 ||||| ||| || || | | |||| |||| | |||| |||| || | || || Sbjct 6197 ATGAAGGAAATTGCAGAAGCCTATCTTGGG-AAGATGGTTACCAATGCTGTGGTCACAGT 6139 Query 550414 ACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGG 550473 ||||| || || ||| | || || || || || || |||| ||||||| ||||||| Sbjct 6138 GCCAGCTTACTTCAATAAGTCTCAGCGACAGGCAACAAAAGTTGCTGGAACTATTGCTAA 6079 Query 550474 ACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGA 550533 || ||||| ||||| |||||||||||||| ||||||||||| |||| |||| | || Sbjct 6078 CCTCAATGTGCTTCGAATTATCAATGAACCAACTGCTGCTGCTATTGCTTATGTGTTAGA 6019 Query 550534 TAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGGT 550582 ||| | || ||| |||||||| || ||||| | |||||| Sbjct 6018 TAAGAAGGTTGGAGCTGAAAGGAATGTACTGATTTTTGACTAGGGAGGT 5970 >seq87143 Length=1077445 Score = 120 bits (132), Expect = 2e-21 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || || ||||| || || ||||| || || || || || || Sbjct 611613 GTTACCAATGCTGTGGTCACAGTGCCAGCTTACTTCAATGATTCTCAGCGACAGGCAACA 611672 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || ||||| ||||| ||||||||||| || |||||| Sbjct 611673 AAAGATGCTGGAACTATTGCTGGCCTCAATGTGCTTCGAATTATCAATGAGCCAACTGCT 611732 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||| ||||| | ||||| Sbjct 611733 GCTGCTATTGCTTATGGGTTAGATAA 611758 >seq97228 Length=228612 Score = 105 bits (116), Expect = 5e-17 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 |||||||||||||| ||| |||| ||| ||||| |||| | ||| | ||||| Sbjct 211774 ACAAGATGAAGGGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTACGGCCATCTT 211717 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | || || || || || || || || |||||||||||||||||||||||||||||||| | Sbjct 211716 CCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 211657 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443 | || || ||||| || || || || | | | | ||||| || | |||| Sbjct 211656 GGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTT 211597 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || |||| || || |||||||| ||||| Sbjct 211596 TCCCCATAAGGGTCTTCACGAAAATCTGCAT 211566 >seq66285 Length=650426 Score = 89.7 bits (98), Expect = 4e-12 Identities = 95/124 (77%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAA-CGTCAAGCTAC 550449 ||||| |||| || || || || |||| ||||| |||||||| ||| | | || || Sbjct 52974 GTTACCAATGCTGTGATCACAGTGCCAGATTATTTCAATGACTCTCAAGCAGTAGGCAAC 52915 Query 550450 TAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGC 550509 |||||||||||| | ||||||| || ||||| ||| | ||||||||| |||| ||| | Sbjct 52914 AAAAGATGCTGGAACTGTTGCTGGCCTCAATGTACTTAGAATTATCAATAAACCAACTAC 52855 Query 550510 TGCT 550513 |||| Sbjct 52854 TGCT 52851 >seq27390 Length=739068 Score = 87.8 bits (96), Expect = 1e-11 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 429290 CGTACATTCAATGGTTTTCCCTTAAGTGGAAATACGCCATAATAATCTCGACCAATAACA 429349 || ||||| | | |||||| |||| |||||||| ||||| | |||| |||| ||| Sbjct 723370 CGCACATTGAGTATTTTTCCTCTAAGAGGAAATACCCCATATTTGTCTCTTCCAACTACA 723429 Query 429350 TTTAGTCCAGACATTGCAAAAGTTTTAGCTGAATCTCCTTCCGTCAAAATAAGTGTACAT 429409 || || || | ||| | |||||| ||||| |||||||| ||||| |||||||||||| Sbjct 723430 CCAAGGCCTGAAACTGCCAGAGTTTTGGCTGAGTCTCCTTCAGTCAAGATAAGTGTACAT 723489 Query 429410 T 429410 | Sbjct 723490 T 723490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4022983017387770