Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq27438 159 3e-33
seq104799 132 4e-25
seq76224 125 6e-23
seq87143 120 2e-21
seq97228 105 5e-17
seq66285 89.7 4e-12
seq27390 87.8 1e-11
>seq27438
Length=395273
Score = 159 bits (176), Expect = 3e-33
Identities = 368/547 (67%), Gaps = 12/547 (2%)
Strand=Plus/Plus
Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057
|| || ||| | || ||||| || ||||| ||||||| || |||| || || ||
Sbjct 214081 GGCATTGATCTTGGCACCACTTACTCCTGTGTGGGTGTTTTTCAGCATGGAAAGGTGGAG 214140
Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117
|| ||||||||||| || | ||| |||| || ||| |||||| |||| || || |
Sbjct 214141 ATAATTGCCAATGACCAGGCGAACCGAACCACACCAAGCTATGTTGCTTTTACTGACAAA 214200
Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACCAATACTA 550175
||| || |||| ||| | | || |||| | || || || || ||||| ||
Sbjct 214201 GAATGACTAATTGGGGATACCTCGAAGAATCAGGTTGCAATG--AACCCCACCAACACAG 214258
Query 550176 TTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATA 550235
|||||||||| |||| | | |||||| | || ||| ||||||| ||||||| | ||||
Sbjct 214259 TTTTTGATGCCAAACATCTGATTGGATGTAGGTTTGATGATTCTGTTGTTCAGTCTGATA 214318
Query 550236 TGAAGCATTGGCCTTTCCAAATTGTTAATGTT----TCTGGAAAACCTTATATTGAAGCT 550291
|| |||| ||||| || | || |||| | | || | | | | |||
Sbjct 214319 TGTAGCACTGGCCCTTTATGGTGGTGAATGATGCAGACAGGCCAGGCCAAGGTCCAAGTA 214378
Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCA-CCAGAACAAATTTCATCTATGGTTTTAAT 550350
| ||||| | ||| | ||| || || || | | || ||| ||||| ||||
Sbjct 214379 GAGTACAAAGGA-GAGACAAAAAGTTTCCACCCGGAGGAGGTGTCCTCTGTGGTTCTAAT 214437
Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATAA 550409
|| ||| | ||| || || | | |||| |||| ||||| |||| || | |
Sbjct 214438 AAAGATGGAGGAAATTGCAGAAGCCTATCTTGG-GAAGACGGTTACCAATGCTGTGGTCA 214496
Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469
| || |||| | || | ||| || || | ||||| || |||||||||||| |||||
Sbjct 214497 CAGTGTCAGCTTGCTTCAGTGATTCTCAGTGGCAAGCAACAAAAGATGCTGGAACTATTG 214556
Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529
|||| || ||||| ||| | |||||||||||||| ||||||||||| |||| |||||
Sbjct 214557 CTGGCCTCAATGTGCTTTGAATTATCAATGAACCAACTGCTGCTGCTATTGCTTATGGGT 214616
Query 550530 TTGATAA 550536
| |||||
Sbjct 214617 TAGATAA 214623
>seq104799
Length=2130
Score = 132 bits (146), Expect = 4e-25
Identities = 278/412 (67%), Gaps = 2/412 (0%)
Strand=Plus/Minus
Query 552180 TTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCC 552239
|||||||| ||| || | || | || |||| || ||||| |||||||| ||||||||
Sbjct 2087 TTCAATGGAAAAGAACTGAAGAAGAGCATTAACCCTGATGAAGCTGTTGCTTATGGTGCA 2028
Query 552240 GCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTT 552299
|| | || ||||| || || |||| | | | ||| || | || || | | ||
Sbjct 2027 GCTGTCCAGGCAGCCATACTGTCTGCAGACAAGTCTGAGAATGTTCAGGATTTGCTGCTC 1968
Query 552300 GTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTT 552359
| |||| |||||||| || |||||| | ||| | | ||| || | ||||||| ||
Sbjct 1967 TTGAATGTCACTCCTCTCTCCCTTGGTATTGAAGCTGCTGGTGGAGTCATGACTATCCTC 1908
Query 552360 ATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGAT 552419
||| | | ||||| || || ||| || | | | || | || ||||| ||
Sbjct 1907 ATCAAGCGCAATACCACCATCCCTACCAAGCAGACACAGACGTTCACCACCTATTCTGAC 1848
Query 552420 AATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAAT 552479
|| || ||| ||| ||||| | | |||||| ||||| | ||||| |||||
Sbjct 1847 AACCAGCCTGGTGTGCTNATTCAGGTGTATGAAGGTGAAAGGGCCATGACTAAGGATAAC 1788
Query 552480 AATCAACTTGGTA-CTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCA 552538
|| | ||||| | |||| | ||| | || || ||||| || || | ||| || || ||
Sbjct 1787 AACCTGCTTGGAAACTTTGTACTTACA-GGCATACCTCCAGCACCCCATGGTGTTCCTCA 1729
Query 552539 AATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590
|||||||| ||||| || || ||||||||||| || | ||||| |||||
Sbjct 1728 GATTGAAGTCACTTTTGACATTGATGCCAATGGCATCCTCAATGTTTCTGCT 1677
>seq76224
Length=91619
Score = 125 bits (138), Expect = 6e-23
Identities = 351/529 (66%), Gaps = 19/529 (4%)
Strand=Plus/Minus
Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123
|||||||| || || ||| |||| || ||| |||||| |||| || || || |||||
Sbjct 6489 GCCAATGACCAGGGGAACTGAACCACACCAAGCTATGTTGCTTTTACTGACACGGAACAA 6430
Query 550124 TTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATACTATTTTTG 550181
||| |||| |||| || || |||| | || || || || | ||| | | |||||
Sbjct 6429 TTAATTGGGGATGNTGCCAAGAATCAGGTTGCAATG--AACCCCATCAACAGT--TTTTG 6374
Query 550182 ATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGC 550241
||| |||| | | || ||| | | || ||||| | | ||||| | ||||||||||
Sbjct 6373 ATGTCAAACATCTGATCGGACGTACGTTGGATGATGCTGTT-TTCAGTCTGATATGAAGC 6315
Query 550242 ATTGGCCT--TTCCAAATTGTT---AATGTTTCTGGAAAACCTTATATTGAAGCTACTCA 550296
| | || | | ||| || |||| | | || | || | | ||| |
Sbjct 6314 ACTAGCTTGGTGGTGAATGGTGGTGAATGATGCAGGCAGGCCCAAGGTCCAAGTAGAGTA 6255
Query 550297 TGAAGGATCTGTTAAACAATTTTC--ACCAGAACAAATTTCATCTATGGTTTTAATGAAA 550354
||||| | | | || |||| ||||| | | || ||||||||| | |||||
Sbjct 6254 AAAAGGA---GAGACAAAAGTTTCTANCCAGAGGAGGTGTCTTCTATGGTTCTGATGAAG 6198
Query 550355 ATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAG-TTACGGATGCAGTAATAACTGT 550413
||||| ||| || || | | |||| |||| | |||| |||| || | || ||
Sbjct 6197 ATGAAGGAAATTGCAGAAGCCTATCTTGGG-AAGATGGTTACCAATGCTGTGGTCACAGT 6139
Query 550414 ACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGG 550473
||||| || || ||| | || || || || || || |||| ||||||| |||||||
Sbjct 6138 GCCAGCTTACTTCAATAAGTCTCAGCGACAGGCAACAAAAGTTGCTGGAACTATTGCTAA 6079
Query 550474 ACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGA 550533
|| ||||| ||||| |||||||||||||| ||||||||||| |||| |||| | ||
Sbjct 6078 CCTCAATGTGCTTCGAATTATCAATGAACCAACTGCTGCTGCTATTGCTTATGTGTTAGA 6019
Query 550534 TAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGGT 550582
||| | || ||| |||||||| || ||||| | ||||||
Sbjct 6018 TAAGAAGGTTGGAGCTGAAAGGAATGTACTGATTTTTGACTAGGGAGGT 5970
>seq87143
Length=1077445
Score = 120 bits (132), Expect = 2e-21
Identities = 114/146 (78%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| |||| || | || || ||||| || || ||||| || || || || || ||
Sbjct 611613 GTTACCAATGCTGTGGTCACAGTGCCAGCTTACTTCAATGATTCTCAGCGACAGGCAACA 611672
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
|||||||||||| ||||||||| || ||||| ||||| ||||||||||| || ||||||
Sbjct 611673 AAAGATGCTGGAACTATTGCTGGCCTCAATGTGCTTCGAATTATCAATGAGCCAACTGCT 611732
Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536
||||| |||| ||||| | |||||
Sbjct 611733 GCTGCTATTGCTTATGGGTTAGATAA 611758
>seq97228
Length=228612
Score = 105 bits (116), Expect = 5e-17
Identities = 151/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323
|||||||||||||| ||| |||| ||| ||||| |||| | ||| | |||||
Sbjct 211774 ACAAGATGAAGGGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTACGGCCATCTT 211717
Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383
| || || || || || || || || |||||||||||||||||||||||||||||||| |
Sbjct 211716 CCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 211657
Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443
| || || ||||| || || || || | | | | ||||| || | ||||
Sbjct 211656 GGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTT 211597
Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| || |||| || || |||||||| |||||
Sbjct 211596 TCCCCATAAGGGTCTTCACGAAAATCTGCAT 211566
>seq66285
Length=650426
Score = 89.7 bits (98), Expect = 4e-12
Identities = 95/124 (77%), Gaps = 1/124 (1%)
Strand=Plus/Minus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAA-CGTCAAGCTAC 550449
||||| |||| || || || || |||| ||||| |||||||| ||| | | || ||
Sbjct 52974 GTTACCAATGCTGTGATCACAGTGCCAGATTATTTCAATGACTCTCAAGCAGTAGGCAAC 52915
Query 550450 TAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGC 550509
|||||||||||| | ||||||| || ||||| ||| | ||||||||| |||| ||| |
Sbjct 52914 AAAAGATGCTGGAACTGTTGCTGGCCTCAATGTACTTAGAATTATCAATAAACCAACTAC 52855
Query 550510 TGCT 550513
||||
Sbjct 52854 TGCT 52851
>seq27390
Length=739068
Score = 87.8 bits (96), Expect = 1e-11
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 429290 CGTACATTCAATGGTTTTCCCTTAAGTGGAAATACGCCATAATAATCTCGACCAATAACA 429349
|| ||||| | | |||||| |||| |||||||| ||||| | |||| |||| |||
Sbjct 723370 CGCACATTGAGTATTTTTCCTCTAAGAGGAAATACCCCATATTTGTCTCTTCCAACTACA 723429
Query 429350 TTTAGTCCAGACATTGCAAAAGTTTTAGCTGAATCTCCTTCCGTCAAAATAAGTGTACAT 429409
|| || || | ||| | |||||| ||||| |||||||| ||||| ||||||||||||
Sbjct 723430 CCAAGGCCTGAAACTGCCAGAGTTTTGGCTGAGTCTCCTTCAGTCAAGATAAGTGTACAT 723489
Query 429410 T 429410
|
Sbjct 723490 T 723490
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4022983017387770
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |