Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_016448.1
Length=196691
Score E
Sequences producing significant alignments: (Bits) Value
seq35690 113 6e-20
seq34919 113 6e-20
seq18173 104 3e-17
seq107976 100 4e-16
seq117652 82.4 1e-10
>seq35690
Length=42660
Score = 113 bits (124), Expect = 6e-20
Identities = 139/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
||||||||||| || | |||||||||||| ||||||||||||||| || || | ||||
Sbjct 31519 CCTTCATGTTGCACATGACATGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCT 31460
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || ||||||||||| | || | ||| || | |||| |||| |||
Sbjct 31459 GCCCACTTCTGGAAGGTCCCATCTCCTGAAGGCCTTGTCTCCACAAGCTCCATATCCTGA 31400
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| ||||| || || || | ||| | | ||| ||||| ||||| || || ||
Sbjct 31399 GTCCAGTCTTCCCCATCCCGCTGCCAGATCAGGGATATCTCAGCAGGATAGAAGCCTAAG 31340
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 31339 GCCCAGCACC 31330
>seq34919
Length=380059
Score = 113 bits (124), Expect = 6e-20
Identities = 149/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 2248 AGAATCGGATCTGCGAGATCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCT 2307
||||| | | ||| |||||||| ||||||||| ||| ||| || | ||| | || |||
Sbjct 305740 AGAATGGAACCTGTGAGATCCACCTGACCTGTATTGTGGAGAATACAAATCATAATGTCT 305681
Query 2308 CCTTCAAATGGGAGGCCTTGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCT 2367
| | ||| |||||| || | || || || | || || || ||||| |||||
Sbjct 305680 CAGTTGGGTGGCAGGCCTCAGGAATCACCTTTTTAAGGGAACCAAATCTCACTGTCTCCT 305621
Query 2368 GGGACCCCAGGAACAGCAGTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCA 2427
||||||| | ||| |||||| ||||| || || ||| || || |||||||| ||||
Sbjct 305620 GGGACCCGAAGAATTCCAGTGACCAGAATTATACCTGCCAAGCTGAGAACGCTGTCAGCA 305561
Query 2428 ATCTCTCTTTCACGGTCTCGGCCCAGA 2454
|||| ||| || | ||||| |||||||
Sbjct 305560 ATCTGTCTGTCTCTGTCTCTGCCCAGA 305534
>seq18173
Length=40700
Score = 104 bits (114), Expect = 3e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
||||||||||| || | ||||| ||||| ||| ||||||||||| || || | |||
Sbjct 26923 CCTTCATGTTGCACATGACATGCATATCTCTGCTCCTCTCCAGAAGGTACCACCACTGCT 26864
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || |||||||| || || | || || ||| |||| | ||||||
Sbjct 26863 GCCCACTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTGTCCATCAGCTCCATGTCTTGA 26804
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| || ||||| || || | | ||| || | |||| ||||| || ||||| |
Sbjct 26803 GTCTGGTCTTCCCCATCCCTCTGCCAGGTCAGGGTTATCTCAGCTGGGTAAAATTTGAGG 26744
Query 14358 GCCCAGCACCGTAAAGT 14374
|||||||||| ||| ||
Sbjct 26743 GCCCAGCACCTTAAGGT 26727
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
||||||||||| || | |||||||| ||| ||| ||||||||||| || || | ||||
Sbjct 3800 CCTTCATGTTGCACATGACATGTGTGTCTCTGCTCCTCTCCAGAAGGTACTACCACAGCT 3741
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || |||||||| || || | || | | |||| | || |||
Sbjct 3740 GCCCACTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTGTTCACTAGCTCCATGTCCTGA 3681
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| || ||||| || || | | ||| || | |||| ||||| ||||| || | |
Sbjct 3680 GTCTGGTCTTCCCCATCCCTCTGCCAGGTCAGGGTTATCTCAGCTGGATAGAATCTGAGG 3621
Query 14358 GCCCAGCACCGTAAAGT 14374
|||||||||| ||| ||
Sbjct 3620 GCCCAGCACCTTAAGGT 3604
>seq107976
Length=334363
Score = 100 bits (110), Expect = 4e-16
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
||||||||||| || | |||||| ||||| ||| ||||||||||| || || | ||||
Sbjct 35880 CCTTCATGTTGCACATGACATGTATATCTCTGCTCCTCTCCAGAAGGTACTACCACAGCT 35821
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || |||||||| || || | || | | | |||| | || |||
Sbjct 35820 GCCCACTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTGTTCACCAGCTCCATGTCCTGA 35761
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| || ||||| || || | | ||| || | | |||||||| || || || || |
Sbjct 35760 GTCTGGTCTTCCCCATCCCTCTGCCAGGTCAGGGTGATATCAGCAGGGTAGAATCCGAGG 35701
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 35700 GCCCAGCACC 35691
Score = 100 bits (110), Expect = 4e-16
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
||||||||||| || | |||||| ||||| ||| ||||||||||| || || | ||||
Sbjct 62755 CCTTCATGTTGCACATGACATGTATATCTCTGCTCCTCTCCAGAAGGTACTACCACAGCT 62696
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || |||||||| || || | || || | | |||| | || ||
Sbjct 62695 GCCCACTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTGTCCACCAGCTCCATGTCCTGG 62636
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| | |||||| || || | | ||| || | | || ||||| || || || ||||
Sbjct 62635 GTCTTATCTTCCCCATCCCTCTGCCAGGTCAGGGTGATGTCAGCAGGGTAGAATCCCAGG 62576
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 62575 GCCCAGCACC 62566
Score = 91.5 bits (100), Expect = 2e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
||||||||||| || | ||||| ||||| ||| ||||||||||| || || | |||
Sbjct 78830 CCTTCATGTTGCACATGACATGNATATCTCTGCTCCTCTCCAGAAGGCACCACCACTGCT 78889
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
||||||| || || || |||||||| || || | || || | | |||| | || |||
Sbjct 78890 GCCCATTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTGTCCACCAGCTCCATGTCCTGA 78949
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| || ||||| || || | | ||| || | || ||||| || || || | |
Sbjct 78950 GTCTGGTCTTCCCCATCCCTCTGCCAGGTCAGGGAGATCTCAGCAGGGTAGAATCTGAGG 79009
Query 14358 GCCCAGCACCGTAAAGT 14374
|||||||||| ||| ||
Sbjct 79010 GCCCAGCACCTTAAGGT 79026
>seq117652
Length=51985
Score = 82.4 bits (90), Expect = 1e-10
Identities = 131/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|| ||||| || || |||||||||||| ||| ||||||||||| || || | ||
Sbjct 12886 CCCTCATGATGCACAAGACATGTGTATCTTTGCTCCTCTCCAGAAGGTACCACCACAGAC 12945
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || ||||| ||||| || || || | || || | |||| | || |||
Sbjct 12946 GCCCACTTCTGGAACGTTCCATCCCCTGCAGGCCTAGTTTCCACTAGCTCCATGTCCTGA 13005
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| || || ||||| || || | ||| || | | || ||| | ||||| || ||||
Sbjct 13006 ATCTGGTCCTCTCCATCACGTTGCCAGGTCAGGGTGATCTCAACTGGATAGAAGCCCAGG 13065
Query 14358 GCCCAGCA 14365
||||||||
Sbjct 13066 GCCCAGCA 13073
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628344207207080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |