Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_017979.1
Length=43376
Score E
Sequences producing significant alignments: (Bits) Value
seq116961 86.0 2e-12
>seq116961
Length=993603
Score = 86.0 bits (94), Expect = 2e-12
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017
|||| | |||||| ||||| ||| ||||||| | || || || || | || | |
Sbjct 255337 TTCCTTCTGGATGCTATGGAAGAGTAGCTCCAGGTTCTGGCTTGGCAGTAAAACCCTTCA 255396
Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077
| ||||| || |||||||| || ||| ||| | ||| || || ||||||||||| | |
Sbjct 255397 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTGCTGT 255456
Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137
|||||||| | | || ||| | | || ||||||| ||||||| ||| | ||||
Sbjct 255457 TTAATTTTGGAAAAGAGAAGTTTGAAGTGAAAAAAGGTGATCGGATTGCACAGCTCATTT 255516
Query 1138 GTGAA 1142
||||
Sbjct 255517 CTGAA 255521
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 138485011291188
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |