Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq116961 86.0 2e-12 >seq116961 Length=993603 Score = 86.0 bits (94), Expect = 2e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | |||||| ||||| ||| ||||||| | || || || || | || | | Sbjct 255337 TTCCTTCTGGATGCTATGGAAGAGTAGCTCCAGGTTCTGGCTTGGCAGTAAAACCCTTCA 255396 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||| | ||| || || ||||||||||| | | Sbjct 255397 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTGCTGT 255456 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137 |||||||| | | || ||| | | || ||||||| ||||||| ||| | |||| Sbjct 255457 TTAATTTTGGAAAAGAGAAGTTTGAAGTGAAAAAAGGTGATCGGATTGCACAGCTCATTT 255516 Query 1138 GTGAA 1142 |||| Sbjct 255517 CTGAA 255521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138485011291188