Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq116961 98.7 8e-16
seq97228 89.7 4e-13
seq75922 82.4 6e-11
>seq116961
Length=993603
Score = 98.7 bits (108), Expect = 8e-16
Identities = 150/209 (72%), Gaps = 5/209 (2%)
Strand=Plus/Minus
Query 9050 TAACCTCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCC 9109
|||| |||| ||| ||| ||||||||| ||||| |||| | || ||||||| || |
Sbjct 255549 TAACTTCTA--AGTCTGG-ATAAAAGATCCGTTCAGAAATGAGCTGTGCAATCCGATCAC 255493
Query 9110 CCTTATTCACGACAAA-GTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCC 9168
| || ||||| |||| ||| | | || ||| |||||||| || || || || ||
Sbjct 255492 CTTTTTTCACTTCAAACTTCTCTTTTCCAA-AATTAAACAGCACAACACCAACATTTCCT 255434
Query 9169 CTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCA 9228
|| ||||| ||||| || |||||||| || || || |||||| | || || || | |||
Sbjct 255433 CTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGGGTTTTACTGCCAAGCCA 255374
Query 9229 GAGCGGGGCGCGATTCGACCGTAGCATCC 9257
|| | || || | || || ||||||||
Sbjct 255373 GAACCTGGAGCTACTCTTCCATAGCATCC 255345
>seq97228
Length=228612
Score = 89.7 bits (98), Expect = 4e-13
Identities = 150/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
|||||| | ||| || ||| ||| |||||||| ||||| ||||| | | | || | ||
Sbjct 211778 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 211719
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|||| ||||||||| || || ||||| | || ||||| | |||| || || || ||
Sbjct 211718 TTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 211659
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
||||| |||||| | | || || || | || ||||| | ||| || ||
Sbjct 211658 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 211599
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
||| ||| | | || || || |||||||||||| ||
Sbjct 211598 TTTCCCCATAAGGGTCTTCACGAAAATCTGCATCTTG 211562
>seq75922
Length=371470
Score = 82.4 bits (90), Expect = 6e-11
Identities = 102/140 (73%), Gaps = 5/140 (4%)
Strand=Plus/Plus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| || || | |||| || || ||| |||||| || || |||||||||||
Sbjct 193725 GCCACCCCTCAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 193784
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG---- 48654
||| | || | || |||| |||||| |||||||| ||||| | |||||| || |
Sbjct 193785 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCGGGGAG 193844
Query 48655 -TGGGAACGCCCTCCTTGTC 48673
||| | ||||||||| ||
Sbjct 193845 AGGGGGATGCCCTCCTTATC 193864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380383389718479
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |