Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq116961 98.7 8e-16 seq97228 89.7 4e-13 seq75922 82.4 6e-11 >seq116961 Length=993603 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/209 (72%), Gaps = 5/209 (2%) Strand=Plus/Minus Query 9050 TAACCTCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCC 9109 |||| |||| ||| ||| ||||||||| ||||| |||| | || ||||||| || | Sbjct 255549 TAACTTCTA--AGTCTGG-ATAAAAGATCCGTTCAGAAATGAGCTGTGCAATCCGATCAC 255493 Query 9110 CCTTATTCACGACAAA-GTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCC 9168 | || ||||| |||| ||| | | || ||| |||||||| || || || || || Sbjct 255492 CTTTTTTCACTTCAAACTTCTCTTTTCCAA-AATTAAACAGCACAACACCAACATTTCCT 255434 Query 9169 CTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCA 9228 || ||||| ||||| || |||||||| || || || |||||| | || || || | ||| Sbjct 255433 CTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGGGTTTTACTGCCAAGCCA 255374 Query 9229 GAGCGGGGCGCGATTCGACCGTAGCATCC 9257 || | || || | || || |||||||| Sbjct 255373 GAACCTGGAGCTACTCTTCCATAGCATCC 255345 >seq97228 Length=228612 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || ||| ||| |||||||| ||||| ||||| | | | || | || Sbjct 211778 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 211719 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||||||| || || ||||| | || ||||| | |||| || || || || Sbjct 211718 TTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 211659 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | || || || | || ||||| | ||| || || Sbjct 211658 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 211599 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||| ||| | | || || || |||||||||||| || Sbjct 211598 TTTCCCCATAAGGGTCTTCACGAAAATCTGCATCTTG 211562 >seq75922 Length=371470 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 5/140 (4%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | |||| || || ||| |||||| || || ||||||||||| Sbjct 193725 GCCACCCCTCAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 193784 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG---- 48654 ||| | || | || |||| |||||| |||||||| ||||| | |||||| || | Sbjct 193785 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCGGGGAG 193844 Query 48655 -TGGGAACGCCCTCCTTGTC 48673 ||| | ||||||||| || Sbjct 193845 AGGGGGATGCCCTCCTTATC 193864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380383389718479