Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq44522 181 2e-40 seq34887 150 3e-31 seq44856 93.3 8e-14 seq14694 84.2 4e-11 >seq44522 Length=222801 Score = 181 bits (200), Expect = 2e-40 Identities = 186/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||| ||||| |||||||| || Sbjct 113285 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGCTTGAGCTGGGCCACTTGC 113344 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | ||| ||| | |||| |||||||| |||| |||||| |||||| Sbjct 113345 TCCCGTAGGAGGCCCGCAGTACTCGACAACCCTGCGTTCTCAGCCTTGAGTGTCTTCACC 113404 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 113405 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 113464 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 | |||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || Sbjct 113465 CTGTTCCGCAGCCGCTTTCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 113524 Query 241625 GAC 241627 ||| Sbjct 113525 GAC 113527 >seq34887 Length=546027 Score = 150 bits (166), Expect = 3e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||||||||| || |||||||| || ||||| | | ||||| | ||| Sbjct 489324 AGGACTTTCTGTTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTGGCGGTGGACGCCAGC 489383 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||| ||| |||||||||||||| |||| ||| |||||||| Sbjct 489384 TCGGTGTTCTGGCTTTTGAGGGTCTTGACTTTCTCCTCCAGGCGCGAGATACGTTCCAGC 489443 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || ||||| || ||||||||| Sbjct 489444 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCTCTTGCGCTCCGCCTTG 489503 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||||||||| ||||||||||| || ||| Sbjct 489504 ATGCGTTCCTGCGTGTCCATGTCGATGGGCGAC 489536 >seq44856 Length=74269 Score = 93.3 bits (102), Expect = 8e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || |||| |||||||||| | || || ||| ||| |||||||||| || |||| || Sbjct 50750 TCATCCCTGCTGATGAGCTCATTTGAAAAGGTGAGTCCAGGCATGAGGCCTCTCTTCTTC 50691 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| || || || || || ||||||||||| | ||| ||||| || ||||| || Sbjct 50690 AGCCAGAATATAGCAGCAAACGACCCAGAGAAGAAAACGCCTTCCACAGCAGCGAAGGC 50632 >seq14694 Length=1798513 Score = 84.2 bits (92), Expect = 4e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| | ||| || ||| | ||||| || || |||||||| | |||| | ||| Sbjct 774098 TCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 774157 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| |||| || |||||||||||||||||||| || ||||| || || || || Sbjct 774158 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACGGCGGCAAAGGC 774216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930142801688320