Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq44856 102 2e-16
seq14694 91.5 3e-13
>seq44856
Length=74269
Score = 102 bits (112), Expect = 2e-16
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942
|||| ||||| ||||||||||| ||| | || ||| || |||||||| || || ||||
Sbjct 50627 TGGTGGCCTTCGCTGCTGTGGAAGGCGTTTTCTTCTCTGGGTCGTTTGCTGCTATATTCT 50686
Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002
|||| ||| ||| || |||||| || || |||||| || ||||||||||||||||
Sbjct 50687 GGCTGAAGAAGAGAGGCCTCATGCCTGGACTCACCTTTTCAAATGAGCTCATCAGCAGGG 50746
Query 26003 ACGAGG 26008
| ||||
Sbjct 50747 ATGAGG 50752
>seq14694
Length=1798513
Score = 91.5 bits (100), Expect = 3e-13
Identities = 100/128 (78%), Gaps = 4/128 (3%)
Strand=Plus/Minus
Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942
|||| |||||||| || ||||| || ||||| ||| || || ||||| | || ||||
Sbjct 774221 TGGTGGCCTTTGCCGCCGTGGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCAATATTCT 774162
Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAG 26000
|||||||| | | |||||| ||||| || || ||| |||||||| ||||| || |||||
Sbjct 774161 GGCTCAAG-AAACGGGGACTGATGCCTGGCCT-TACGTTTTCCAATGAGCTTATTAGCAG 774104
Query 26001 GGACGAGG 26008
|||||||
Sbjct 774103 AGACGAGG 774096
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 927458812621120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |