Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq44856 102 2e-16 seq14694 91.5 3e-13 >seq44856 Length=74269 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||| ||||||||||| ||| | || ||| || |||||||| || || |||| Sbjct 50627 TGGTGGCCTTCGCTGCTGTGGAAGGCGTTTTCTTCTCTGGGTCGTTTGCTGCTATATTCT 50686 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || |||||| || || |||||| || |||||||||||||||| Sbjct 50687 GGCTGAAGAAGAGAGGCCTCATGCCTGGACTCACCTTTTCAAATGAGCTCATCAGCAGGG 50746 Query 26003 ACGAGG 26008 | |||| Sbjct 50747 ATGAGG 50752 >seq14694 Length=1798513 Score = 91.5 bits (100), Expect = 3e-13 Identities = 100/128 (78%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| |||||||| || ||||| || ||||| ||| || || ||||| | || |||| Sbjct 774221 TGGTGGCCTTTGCCGCCGTGGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCAATATTCT 774162 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAG 26000 |||||||| | | |||||| ||||| || || ||| |||||||| ||||| || ||||| Sbjct 774161 GGCTCAAG-AAACGGGGACTGATGCCTGGCCT-TACGTTTTCCAATGAGCTTATTAGCAG 774104 Query 26001 GGACGAGG 26008 ||||||| Sbjct 774103 AGACGAGG 774096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927458812621120