Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_019559.1
Length=202946
Score E
Sequences producing significant alignments: (Bits) Value
seq66404 168 9e-37
>seq66404
Length=212649
Score = 168 bits (186), Expect = 9e-37
Identities = 225/310 (73%), Gaps = 2/310 (1%)
Strand=Plus/Minus
Query 153702 AGTTGAAGTGGTAACACAGGATGTAAATTCATCA-CTTCGATCGCCCGCGTCCCTCAGAT 153760
||| |||||||| || ||||||| | | | | || | || || || ||| | |||
Sbjct 31339 AGTGGAAGTGGTGACCCAGGATG-AGAGAAAGCTGCTGCACTCACCTGCATCCTTGCGAT 31281
Query 153761 GCTCGTTGAAAACTACACAAGAACCTTTAATTGTAACGTGGCAAAAGAAGAAAGCTGTAG 153820
| || |||| | || ||||| || ||||| || ||||| |||||||||||||||
Sbjct 31280 GTTCTCTGAAGCTGGCCCAGGAACCCTTGATTGTGACATGGCAGAAGAAGAAAGCTGTAA 31221
Query 153821 GTCCAGAAAATATGGCCACGTATAGCAAAGCCCACGGTGTAGTGCTTCAGCCCACATATA 153880
| |||||||| |||| ||| || ||||||||||| || || || | ||||| ||||||
Sbjct 31220 GCCCAGAAAACATGGTCACTTACAGCAAAGCCCATGGGGTTGTAGTCCAGCCTGCATATA 31161
Query 153881 AAGATAGAATTAATATAACCGAATTAGGTCTTTTAAACAGTAGTATAACGTTTTGGAATG 153940
||| | || || || || || | || || | |||| || || || ||||||||
Sbjct 31160 GAGACAAGATGAACATCACTGAGCTGGGACTCTGGAACACAAGCATCACCTTTTGGAACA 31101
Query 153941 CAACACTGGATGATGAAGGCTGTTATATGTGTCTGTTTAATATGTTCGGTTCTGGTAAGG 154000
|||||||||||||||| ||||| || |||||||| || |||| || |||||| |||
Sbjct 31100 CAACACTGGATGATGAGGGCTGCTACATGTGTCTCTTCAATACTTTTCATTCTGGGAAGA 31041
Query 154001 TATCGGGAAC 154010
| || |||||
Sbjct 31040 TCTCAGGAAC 31031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 648330340082480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |