Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_019559.1 Length=202946 Score E Sequences producing significant alignments: (Bits) Value seq66404 168 9e-37 >seq66404 Length=212649 Score = 168 bits (186), Expect = 9e-37 Identities = 225/310 (73%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 153702 AGTTGAAGTGGTAACACAGGATGTAAATTCATCA-CTTCGATCGCCCGCGTCCCTCAGAT 153760 ||| |||||||| || ||||||| | | | | || | || || || ||| | ||| Sbjct 31339 AGTGGAAGTGGTGACCCAGGATG-AGAGAAAGCTGCTGCACTCACCTGCATCCTTGCGAT 31281 Query 153761 GCTCGTTGAAAACTACACAAGAACCTTTAATTGTAACGTGGCAAAAGAAGAAAGCTGTAG 153820 | || |||| | || ||||| || ||||| || ||||| ||||||||||||||| Sbjct 31280 GTTCTCTGAAGCTGGCCCAGGAACCCTTGATTGTGACATGGCAGAAGAAGAAAGCTGTAA 31221 Query 153821 GTCCAGAAAATATGGCCACGTATAGCAAAGCCCACGGTGTAGTGCTTCAGCCCACATATA 153880 | |||||||| |||| ||| || ||||||||||| || || || | ||||| |||||| Sbjct 31220 GCCCAGAAAACATGGTCACTTACAGCAAAGCCCATGGGGTTGTAGTCCAGCCTGCATATA 31161 Query 153881 AAGATAGAATTAATATAACCGAATTAGGTCTTTTAAACAGTAGTATAACGTTTTGGAATG 153940 ||| | || || || || || | || || | |||| || || || |||||||| Sbjct 31160 GAGACAAGATGAACATCACTGAGCTGGGACTCTGGAACACAAGCATCACCTTTTGGAACA 31101 Query 153941 CAACACTGGATGATGAAGGCTGTTATATGTGTCTGTTTAATATGTTCGGTTCTGGTAAGG 154000 |||||||||||||||| ||||| || |||||||| || |||| || |||||| ||| Sbjct 31100 CAACACTGGATGATGAGGGCTGCTACATGTGTCTCTTCAATACTTTTCATTCTGGGAAGA 31041 Query 154001 TATCGGGAAC 154010 | || ||||| Sbjct 31040 TCTCAGGAAC 31031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 648330340082480