Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq27438 192 4e-43
seq104799 132 3e-25
seq76224 123 2e-22
seq87143 109 4e-18
seq97228 100 2e-15
seq7954 89.7 3e-12
seq117227 87.8 1e-11
seq55092 86.0 4e-11
>seq27438
Length=395273
Score = 192 bits (212), Expect = 4e-43
Identities = 379/555 (68%), Gaps = 8/555 (1%)
Strand=Plus/Plus
Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387
|||| |||| |||||| | || || |||||| ||||| | ||||| || |||| ||
Sbjct 214074 TGCAGTTGGCATTGATCTTGGCACCACTTACTCCTGTGTGGGTGTTTTTCAGCATGGAAA 214133
Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447
|| || ||||||||||||||||| | || |||| |||||| |||||| |||||||
Sbjct 214134 GGTGGAGATAATTGCCAATGACCAGGCGAACCGAACCACACCAAGCTATGTTGCTTTTAC 214193
Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507
||| | ||| || ||||| ||| | | || |||| | |||| || || ||
Sbjct 214194 TGACAAAGAATGACTAATTGGGGATACCTCGAAGAATCAGGTTGCAATGAACCCCACCAA 214253
Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567
|| |||||||||| ||| ||||||| ||| ||||||||| | ||| || ||
Sbjct 214254 CACAGTTTTTGATGCCAAACATCTGATTGGATGTAGGTTTGATGATTCTGTTGTTCAGTC 214313
Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCA----TATATAG 474623
||||||| || ||||| |||| |||| | |||| || | | ||| | |
Sbjct 214314 TGATATGTAGCACTGGCCCTTTATGGTGGTGAATGATGCAGACAGGCCAGGCCAAGGTCC 214373
Query 474624 AAGCAATACACGCAGGTGAAACTAAACAATTTTCA-CCGGAACAAATTTCTTCAATGGTT 474682
||| | || ||| || || ||| | ||| || ||||| | | || || |||||
Sbjct 214374 AAGTAGAGTACAAAGGAGAGAC-AAAAAGTTTCCACCCGGAGGAGGTGTCCTCTGTGGTT 214432
Query 474683 TTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGT 474741
|| || ||| | ||| || | |||||||| |||| || || |||| ||
Sbjct 214433 CTAATAAAGATGGAGGAAATTGCAGAAGCCTATCTTGG-GAAGACGGTTACCAATGCTGT 214491
Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801
| || || |||| | || | ||||||||| | |||||||| |||||||| ||||
Sbjct 214492 GGTCACAGTGTCAGCTTGCTTCAGTGATTCTCAGTGGCAAGCAACAAAAGATGCTGGAAC 214551
Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861
||||| || || ||||| | | ||||| ||||||||||| || || || |||||||
Sbjct 214552 TATTGCTGGCCTCAATGTGCTTTGAATTATCAATGAACCAACTGCTGCTGCTATTGCTTA 214611
Query 474862 TGGTCTTGATAAGAA 474876
||| | ||||||||
Sbjct 214612 TGGGTTAGATAAGAA 214626
Score = 136 bits (150), Expect = 3e-26
Identities = 441/679 (65%), Gaps = 18/679 (3%)
Strand=Plus/Plus
Query 475497 CTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTG 475556
|||| |||||||| |||||| | | || || ||| || || | | | |||| |||
Sbjct 214857 CTGCCTGTGAACGGGCTAAGTGCACCCTCTCCTCTAGCACCCAGGCCAGTATTGAGATTG 214916
Query 475557 ATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATA 475616
||||||| | ||| ||||| || | ||||| ||||| || ||| |||||||||
Sbjct 214917 ATTCTCTGTATGAGGGAATCGACTTCTATACTTCCATTACCAGTGCTCGATTTGAAGAAT 214976
Query 475617 TTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTA 475676
| | |||| || || || || | || | || ||| | | || ||||| |
Sbjct 214977 TAAATGCTGACCTGTTCCGAGGCACTCTGGACCATGTGGAAAAGGCCCTTTGAGATGTCA 215036
Query 475677 AACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTC-CA 475735
|||| ||||| ||||| ||| | || || ||||| || ||||| | ||
Sbjct 215037 AACTAGACAAGTCACAGATCC------------TGGTGGGTGGTTCTACCAGAATCCTCA 215084
Query 475736 AAAATAAGAGAAATGCTTTCATCATATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAAT 475795
| | | ||| | | || | | || ||||| ||| | | ||| | || | ||
Sbjct 215085 AGATTCAGA-AGCTTCTGCAAGACTTCTTCAATGGAAAAGAACTGAATAAGAGCATTAAC 215143
Query 475796 CCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCA 475855
|| ||||||||||||| ||||| || |||||||| ||||| ||| |||| || | |
Sbjct 215144 CCCAATGAAGCTGTTGCTTATGGTGCAGCTGTCCAGGCAGCCATTCTATCTGGAGACA-A 215202
Query 475856 GAC-GAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGA 475914
| | ||||| | | || | | || | || || ||||| || || | ||| |||
Sbjct 215203 GTCTGAGAACATTCAGGATTTGCTGCTCTTGGATGTCACTCCTCTCTCCCTTGGTACTGA 215262
Query 475915 AACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAA 475974
| | | ||| || | |||||| || || | ||||| | ||||| ||| |
Sbjct 215263 AGCTGCTGGTGGAGTCATGACTGTCCTCATCAGGCGCAATACCACCATCCCTACCAAGCA 215322
Query 475975 ATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGA 476034
|| | || ||| || ||||| || | | ||| | || || | | |||
Sbjct 215323 GACACAGACTTTCACCATATACTCTGACAACTAGCCTGGTGTCTC-ATTCAGGTGTATGA 215381
Query 476035 AGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTAT 476094
||||||||| | || || ||||| ||| ||||||| ||| | ||| ||| ||
Sbjct 215382 AGGTGAAAGGGCCATGACCAA-GATAACAACCTGCTTGGAAAGTTTGACCTTACAGGCAT 215440
Query 476095 TCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGG 476154
|||| ||| | | | || |||||||| |||||||| |||||||| ||||||||||| ||
Sbjct 215441 ACCTCTTGCACACCGTGGTGTTCCTCAGATTGAAGTCACTTTTGACATTGATGCAAAAGG 215500
Query 476155 TATTCTTAATGTTACTGCT 476173
|| || |||||| |||||
Sbjct 215501 CATCCTCAATGTTTCTGCT 215519
>seq104799
Length=2130
Score = 132 bits (146), Expect = 3e-25
Identities = 261/383 (68%), Gaps = 4/383 (1%)
Strand=Plus/Minus
Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852
|| ||||||||||||||||| ||||| || |||||||| ||||| || | || | ||
Sbjct 2057 AACCCTGATGAAGCTGTTGCTTATGGTGCAGCTGTCCAGGCAGCCATACTGTCTG--CAG 2000
Query 475853 TCA-GAC-GAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTC 475910
|| | | ||||| | | || | | || | | || ||||| || || | |||
Sbjct 1999 ACAAGTCTGAGAATGTTCAGGATTTGCTGCTCTTGAATGTCACTCCTCTCTCCCTTGGTA 1940
Query 475911 TTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCA 475970
||||| | | ||| || | ||||||| || || | | ||||| | ||||| ||
Sbjct 1939 TTGAAGCTGCTGGTGGAGTCATGACTATCCTCATCAAGCGCAATACCACCATCCCTACCA 1880
Query 475971 AAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCT 476030
| | || | || |||| |||||||| || || | ||| || || | |
Sbjct 1879 AGCAGACACAGACGTTCACCACCTATTCTGACAACCAGCCTGGTGTGCTNATTCAGGTGT 1820
Query 476031 TTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAG 476090
|||||||||||| | ||||| ||||| ||| ||||||| ||| ||| ||
Sbjct 1819 ATGAAGGTGAAAGGGCCATGACTAAGGATAACAACCTGCTTGGAAACTTTGTACTTACAG 1760
Query 476091 GTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAA 476150
| || ||||| || ||| || |||||||| |||||||| |||||||| |||||||| |
Sbjct 1759 GCATACCTCCAGCACCCCATGGTGTTCCTCAGATTGAAGTCACTTTTGACATTGATGCCA 1700
Query 476151 ATGGTATTCTTAATGTTACTGCT 476173
|||| || || |||||| |||||
Sbjct 1699 ATGGCATCCTCAATGTTTCTGCT 1677
>seq76224
Length=91619
Score = 123 bits (136), Expect = 2e-22
Identities = 322/483 (67%), Gaps = 13/483 (3%)
Strand=Plus/Minus
Query 474401 GCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACAT 474460
||||||||||| || || |||| |||||| |||||| |||||||||| || |||||
Sbjct 6489 GCCAATGACCAGGGGAACTGAACCACACCAAGCTATGTTGCTTTTACTGACACGGAACAA 6430
Query 474461 CTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGAT 474520
| ||||| |||| ||| || |||| | |||| || || | || | | |||||||
Sbjct 6429 TTAATTGGGGATGNTGCCAAGAATCAGGTTGCAATGAACCCCATCAACAGT--TTTTGAT 6372
Query 474521 GCTAAAAGAT-TGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCA 474579
| | ||| || |||| || |||| || |||||| | | || | ||||||||| ||
Sbjct 6371 G-TCAAACATCTGATCGGACGTACGTTGGATGATGCTGTTTTC-AGTCTGATATGAAGCA 6314
Query 474580 TTGGCCTTTT-----AAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAATACAC 474634
| || | | | |||| | |||| || || | || | | ||| | |
Sbjct 6313 CTAGCTTGGTGGTGAATGGTGGTGAATGATGCAGGCAGGCCCAAGGTCCAAGTAGAGTAA 6254
Query 474635 GCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATG 474694
||| || || ||| || | || || | | ||||| |||||| | || |||
Sbjct 6253 AAAGGAGAGACAAAAGT-TTCTANCCAGAGGAGGTGTCTTCTATGGTTCTGATGAAGATG 6195
Query 474695 AAACAAACCGCGAGCTCATATCTTGGACAAGAAG-TAACTGATGCAGTAATTACTGTTCC 474753
|| ||| || | |||||||| |||| | | || |||| || | || || ||
Sbjct 6194 AAGGAAATTGCAGAAGCCTATCTTGGG-AAGATGGTTACCAATGCTGTGGTCACAGTGCC 6136
Query 474754 AGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCT 474813
||| || || ||| | ||||| || || ||||| |||| ||| |||| ||||| ||
Sbjct 6135 AGCTTACTTCAATAAGTCTCAGCGACAGGCAACAAAAGTTGCTGGAACTATTGCTAACCT 6076
Query 474814 TAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAA 474873
||||| | || ||||| ||||||||||| || || || ||||||||| | |||||
Sbjct 6075 CAATGTGCTTCGAATTATCAATGAACCAACTGCTGCTGCTATTGCTTATGTGTTAGATAA 6016
Query 474874 GAA 474876
|||
Sbjct 6015 GAA 6013
>seq87143
Length=1077445
Score = 109 bits (120), Expect = 4e-18
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091
|||||||||||| | ||||| ||||| ||| ||||| | ||| | ||| |||
Sbjct 613069 TGAAGGTGAAAGGGCCATGACTAAGGATAACAACCTGCTTGGGAAGTTTGAACTTACAGG 613128
Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151
|| ||||| || ||| | || |||||||| |||||||| |||||||| |||||||| ||
Sbjct 613129 CATACCTCCAGCACCCCGTGGTGTTCCTCAGATTGAAGTCACTTTTGACATTGATGCCAA 613188
Query 476152 TGGTATTCTTAATGTTACTGCTTGTGATAA 476181
||| || || |||||| ||||| |||||
Sbjct 613189 TGGCATCCTCAATGTTTCTGCTGTAGATAA 613218
Score = 107 bits (118), Expect = 1e-17
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || | || || ||||| || || ||||||||||| || || ||||| |||||||
Sbjct 611620 ATGCTGTGGTCACAGTGCCAGCTTACTTCAATGATTCTCAGCGACAGGCAACAAAAGATG 611679
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| |||| ||||| || || ||||| | || ||||| ||||| ||||| || || ||
Sbjct 611680 CTGGAACTATTGCTGGCCTCAATGTGCTTCGAATTATCAATGAGCCAACTGCTGCTGCTA 611739
Query 474855 TTGCTTATGGTCTTGATAAGAA 474876
|||||||||| | ||||||||
Sbjct 611740 TTGCTTATGGGTTAGATAAGAA 611761
Score = 93.3 bits (102), Expect = 3e-13
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387
|||| |||| |||||| | || || || ||| ||||| | ||| | || |||| ||
Sbjct 610847 TGCAGTTGGCATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGGAA 610906
Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447
|| || || |||||||||||||| || || |||| || || |||||| |||||||
Sbjct 610907 GGTGGAGATCATTGCCAATGACCAGGGGAACCGAACCACCCCCAGCTATGTTGCTTTTAC 610966
Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCA 474493
||| || |||| | ||||| ||||| || || |||| | ||||
Sbjct 610967 TGACACGGAACGATTAATTGGGGATGCCGCGAAGAATCAGGTTGCA 611012
>seq97228
Length=228612
Score = 100 bits (110), Expect = 2e-15
Identities = 157/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608
|||||| | | ||||||||||| || ||| |||| ||| || || |||| | |
Sbjct 211787 ACGAAGTCTCAACACAAGATGAAGGGTGGACTC-CTTTTGAATG-TTGTAGTCAGACAAA 211730
Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668
|| | | |||||| || ||||| ||||| || || || | ||| |||||||||||||||
Sbjct 211729 GTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATT 211670
Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728
||||| || || || ||||| || ||| ||| ||||| || | | || | ||
Sbjct 211669 CCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCG 211610
Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || ||||| || | || ||||| |||||||| ||
Sbjct 211609 AGCGTGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTG 211569
>seq7954
Length=808569
Score = 89.7 bits (98), Expect = 3e-12
Identities = 145/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 480564 ACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTT 480621
||||||||||| || ||| |||| ||| | || |||| | ||| | | |||||
Sbjct 793850 ACAAGATGAAGGGTGGACTC-CTTTTGAATGCTG-TAGTCAGACAAAGTACGGCCATCTT 793793
Query 480622 CAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTT 480681
| || ||||| ||||| || || || | ||| ||||||||||||||||||||||| || |
Sbjct 793792 CCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCT 793733
Query 480682 GAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTT 480741
| ||||| || | | ||| ||||| || | | || | || || || || ||||
Sbjct 793732 GGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGTTT 793673
Query 480742 TACCGGTGAGAGTCTTAACGAAAAT 480766
| || || | ||||| || |||||
Sbjct 793672 TCCCTGTAAAGGTCTTCACAAAAAT 793648
>seq117227
Length=121535
Score = 87.8 bits (96), Expect = 1e-11
Identities = 147/208 (71%), Gaps = 5/208 (2%)
Strand=Plus/Minus
Query 480564 ACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTT 480621
||||||||||| || ||| |||| ||| || || |||| | ||| | | |||||
Sbjct 79494 ACAAGATGAAGGGTGGACTC-CTTTTGAATG-TTGTAGTCAGACAAAGTACAGCCATCTT 79437
Query 480622 CAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTT 480681
| || ||||| ||||||| || || | || | ||||||||||||||||||||| || |
Sbjct 79436 CCAGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGGAATTCCTTCCTTATCCT 79377
Query 480682 GAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTT 480741
| ||||| || ||| ||| ||||| || | | || | | || || || ||||
Sbjct 79376 GGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGTGATGGTTT 79317
Query 480742 TACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || || || ||| | |||||||| ||
Sbjct 79316 TCCCTGTAAG-GTCCTCACGAAAATCTG 79290
>seq55092
Length=657151
Score = 86.0 bits (94), Expect = 4e-11
Identities = 116/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 475877 GTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACT 475936
||||| |||||||| ||| ||| || | ||| ||||||| || ||||| | |||||
Sbjct 238283 GTACTGCTTGACGTATGTCCCCTTACACTTGGTATTGAAACTGTGGGAGGTGTCATGACC 238342
Query 475937 AATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTAT 475996
|| || ||| || || ||| | || ||| || || | | |||||||| |
Sbjct 238343 AAACTGATTCCAAGGAACACTGTGGTACCCACCAAGAAGTCTCAGATCTTTTCCACAGCT 238402
Query 475997 TCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGT 476038
||||||||||| |||||||||| ||| || ||| |||||||
Sbjct 238403 TCTGATAATCAGCCAACTGTAACAATCAAAGTCTATGAAGGT 238444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3263058712832204
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |