Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq87223 329 4e-85
seq112772 102 9e-17
seq34769 95.1 1e-14
>seq87223
Length=339319
Score = 329 bits (364), Expect = 4e-85
Identities = 672/989 (68%), Gaps = 19/989 (2%)
Strand=Plus/Minus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
|||||| || |||| ||| |||| ||| | |||||| || ||| || ||||| ||
Sbjct 190262 CAGATGCTCATCCAAACACTGGATGGCAANNGGGTCAACATCCATGTCAAACTTATTGGC 190203
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
||| | ||||| | | | || ||||| ||| ||| || | ||||| || |||||
Sbjct 190202 GAAAAAGTGGTGTGTGC---GAAGCATCCACCGCAAGTCACCAGCTCCGAAAACACAGAC 190146
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
||| || | || || ||| |||| || ||||| |||| ||||| | || ||||||||
Sbjct 190145 GGAGCGCACATGGACCCCGCTGCACGGTGGGTAAGGAGCGCCTTTGGAAACATCACCTTC 190086
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
||||||||||||| |||||||| || | || | |||||| || ||| || || |
Sbjct 190085 AAAGTACTGCCACTTGACAAACCTAGCAACAGCATTCATGTCAGACAAGTCATACTTATG 190026
Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350
| | |||||| | ||| || || |||| || | ||| | |||||||| |||| |
Sbjct 190025 GCTTGAGGGGAGAGA-ACCAGGGACTTCGGGGATCCTCTGGATAGTGGCCCAGAGGTACT 189967
Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT--TAACCTGTCCCG 160408
| || |||||||| ||||||| | ||| |||||||||| | ||| | | | | |
Sbjct 189966 CATCCGGGCTGTATGTGTCCTGTGCCCACTCCATGAACTTTTGGATATTTTCATTTTCT- 189908
Query 160409 CAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGG 160468
|| || | | || || | || |||||||| || ||||| || || | ||
Sbjct 189907 -AGCACATAGCCTATATATTCCCTACTGACTACAAAGTAGGCACTGCCTGAAAAAAGAGG 189849
Query 160469 ---TATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCAC 160525
| || || ||| |||| ||||| | || ||||| | || | || | ||
Sbjct 189848 AGTTTTGAGTGGAGGTGGCG---CTTTGACTACCCCCGTGTTGGTCAGCTTCCCGTCAAC 189792
Query 160526 CAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAG 160585
| |||| || || ||||| || || ||||| | | ||||| || || |||||
Sbjct 189791 GATGGCGTACCGTTTTTTCCATCTTTCCTCCTTGTTCTGAGGCATCTTCTCAGTTTCTAG 189732
Query 160586 ACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGG 160645
|||| |||| ||| || || |||| | |||| || |||||||| || |||| ||
Sbjct 189731 GTTGTTCTCACCCGAGAGTGACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTGATAGG 189672
Query 160646 AAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTC 160705
|| || |||| || | || |||| ||||||||| || || |||| | ||||||
Sbjct 189671 GAAATCCATACCACAAAGATTGATCAAGTACTTCCAGTTTGCACTCATTCTATACAGGTC 189612
Query 160706 CCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAG 160765
| |||| || || | || ||||| || || |||||||| || || || || ||||| |
Sbjct 189611 CTTCATACAGTTGAGGTCAGCCTGAACCCGACTCCAGGATGCATAAACAACATTCTCCAA 189552
Query 160766 TTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAAG 160823
| |||||||||||||| ||||| || || || | || |||| ||| | ||| |||
Sbjct 189551 CTGGCTGGCCACAAAGACATTATCAAAGCAGGATGCAATGCCCATCACTG-CAGCTAAAA 189493
Query 160824 AACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATG 160883
| || | || || ||| |||||| || | ||| || | ||||||||| ||||||
Sbjct 189492 AGGAT-TCCTCTGCTTTTTTGTCCACATGAATGCAGTAGAAATTCTGAGGCATATAGATG 189434
Query 160884 GCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATC 160943
||||| || | ||| || | ||| || ||||| ||||| | ||| || || || || ||
Sbjct 189433 GCCCTCAGGAGCCTATCAAGCATTTCAATCTTGTGATGAACCACTATGGAATATGCAATT 189374
Query 160944 GGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAA 161003
||||| || ||| || ||| |||| | | | || || ||| | |||| |||
Sbjct 189373 GGAAAGTCTACCTCTTCTTTACTAAGGGGCTCTACAATATATTTGCGCACCCTGATGAAA 189314
Query 161004 TAATCACAATCCCGCGTCATGTTGATATA 161032
| ||||||| || |||||||| |||||
Sbjct 189313 GAGGCACAATCACGGGTCATGTTTATATA 189285
>seq112772
Length=1341
Score = 102 bits (112), Expect = 9e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291
||||| ||| | | |||| || |||| |||||| | ||||| || |||| | | |
Sbjct 1043 AGATAGTTTGCCAACTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCAGCT 984
Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351
||||| || || ||||| |||| || || ||||| | || | ||||| | | ||
Sbjct 983 GGAATATAATTCTCATAGTTTTCCCTAGATGGTCCAAGGACAACAGGTACTGAGCCAGCC 924
Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411
|| |||| ||||| |||||||| |||||| || ||||||||||||||||||| |
Sbjct 923 AAAAATGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGAATTGAGTTTTCAAACGAA 864
Query 176412 AAATAGAACTTACA 176425
| ||| || |||||
Sbjct 863 AGATAAAATTTACA 850
>seq34769
Length=1374272
Score = 95.1 bits (104), Expect = 1e-14
Identities = 180/265 (68%), Gaps = 0/265 (0%)
Strand=Plus/Plus
Query 160120 GGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTA 160179
||||| ||||| || |||||||||| ||| || ||||| | | ||||||| ||
Sbjct 612783 GGTGATGGTTCTTCAGTATCCAGTGCAGGTCCCCAGACCCATAAATACAGACGGCCCGCT 612842
Query 160180 TGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACT 160239
||| | || |||||| | ||| | || || | | | | ||| || |||| || ||
Sbjct 612843 GGTGGATTCCTGAGCAAGGTGTGTAGGGCGCCCCATCCTCAATGTCTCCCTCGTGGTCCT 612902
Query 160240 GCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGG 160299
||||||| | | ||| || || | |||||| ||| ||| |||||| || ||
Sbjct 612903 GCCACTTGATTAGCCTTGCAATAGATCTCATGTCTGAGAGGTCAAATTTGTGGTGCAAGG 612962
Query 160300 GAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGC 160359
|||| | || || | | | |||||| ||||||||||| |||||||| || || |
Sbjct 612963 GAACTGATCCAGGCATCCATGAGGCACGCTGGAGGGTGGCCCAAAGGTGTTCATCAGGAC 613022
Query 160360 TGTACGTGTCCTTAGACCATTCCAT 160384
| || ||||| || |||||| ||
Sbjct 613023 TATAGGTGTCTTTTACCCATTCGAT 613047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 576357895155480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |