Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq97228 86.0 9e-12
seq7954 84.2 3e-11
>seq97228
Length=228612
Score = 86.0 bits (94), Expect = 9e-12
Identities = 108/146 (74%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966
|| || || ||||||||||| || ||||| || || ||||| |||| | || ||||||
Sbjct 211650 AAGATCCAGGATAAAGAAGGAATTCCTCCTGATCAGCAAAGGCTGATCTTCGCTGGTAAG 211709
Query 155967 CAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA-GAGGCGACGCTTCA 156025
||||| |||||| | | ||||| || || || || || || ||| ||| | || |||||
Sbjct 211710 CAGCTGGAAGATGGCCGTACTTTGTCTGACTACAACAT-TCAAAAGGAGTCCACCCTTCA 211768
Query 156026 TTTAGTGTTAAGATTAAGAGGCGGTG 156051
| | ||||| ||| | | || ||||
Sbjct 211769 TCTTGTGTTGAGACTTCGTGGTGGTG 211794
>seq7954
Length=808569
Score = 84.2 bits (92), Expect = 3e-11
Identities = 152/220 (69%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|| ||| | || ||| | || || || || || ||||| || || | || || |||
Sbjct 793639 AAGATGGAGATTTTTGTGAAGACCTTTACAGGGAAAACCATCACGCTCGAGGTTGAACCC 793698
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
|| || | ||| ||| |||| || || || ||||| ||||| || ||||| ||
Sbjct 793699 TCAGACACTATAGAAAATTTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 793758
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|| ||||| |||| | || ||||||||||| |||||| | | ||||| || || ||
Sbjct 793759 CAGCAAAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 793818
Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGA 156038
| || || ||| ||| | || |||||| | ||||| |||
Sbjct 793819 AGCAT-TCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGA 793857
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 730779928046800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |