Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq97228 86.0 9e-12 seq7954 84.2 3e-11 >seq97228 Length=228612 Score = 86.0 bits (94), Expect = 9e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 || || || ||||||||||| || ||||| || || ||||| |||| | || |||||| Sbjct 211650 AAGATCCAGGATAAAGAAGGAATTCCTCCTGATCAGCAAAGGCTGATCTTCGCTGGTAAG 211709 Query 155967 CAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA-GAGGCGACGCTTCA 156025 ||||| |||||| | | ||||| || || || || || || ||| ||| | || ||||| Sbjct 211710 CAGCTGGAAGATGGCCGTACTTTGTCTGACTACAACAT-TCAAAAGGAGTCCACCCTTCA 211768 Query 156026 TTTAGTGTTAAGATTAAGAGGCGGTG 156051 | | ||||| ||| | | || |||| Sbjct 211769 TCTTGTGTTGAGACTTCGTGGTGGTG 211794 >seq7954 Length=808569 Score = 84.2 bits (92), Expect = 3e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||| | || ||| | || || || || || ||||| || || | || || ||| Sbjct 793639 AAGATGGAGATTTTTGTGAAGACCTTTACAGGGAAAACCATCACGCTCGAGGTTGAACCC 793698 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| ||| |||| || || || ||||| ||||| || ||||| || Sbjct 793699 TCAGACACTATAGAAAATTTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 793758 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||||| |||| | || ||||||||||| |||||| | | ||||| || || || Sbjct 793759 CAGCAAAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 793818 Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGA 156038 | || || ||| ||| | || |||||| | ||||| ||| Sbjct 793819 AGCAT-TCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGA 793857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730779928046800