Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq97228 104 4e-17
>seq97228
Length=228612
Score = 104 bits (114), Expect = 4e-17
Identities = 167/240 (70%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || |||||| | ||||| || || | ||| | || | ||| || ||| ||
Sbjct 211802 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTT 211743
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
|| || || |||| || | || |||| || |||||||| || || | || || ||
Sbjct 211742 GTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTG 211683
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
||||| || |||||||||||||| || || || |||||||| |||||| || ||
Sbjct 211682 ATCAGGAGGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGA 211623
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
| ||| || || || || |||||||| || | | || || | ||| |||||||| ||
Sbjct 211622 GGGTTCAACCTCGAGCGTGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCATCTT 211563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903785390003400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |