Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq97228 104 4e-17 >seq97228 Length=228612 Score = 104 bits (114), Expect = 4e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | || | ||| || ||| || Sbjct 211802 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTT 211743 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| || | || |||| || |||||||| || || | || || || Sbjct 211742 GTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTG 211683 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||||||||| || || || |||||||| |||||| || || Sbjct 211682 ATCAGGAGGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGA 211623 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || |||||||| || | | || || | ||| |||||||| || Sbjct 211622 GGGTTCAACCTCGAGCGTGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCATCTT 211563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903785390003400