Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq117061 167 3e-35
seq116971 158 1e-32
seq8896 158 1e-32
seq44436 140 4e-27
seq34771 125 9e-23
seq17733 107 2e-17
seq117011 86.0 8e-11
>seq117061
Length=280271
Score = 167 bits (184), Expect = 3e-35
Identities = 167/217 (77%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | |||||||||||| ||||||||||| || | ||
Sbjct 174601 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 174660
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| | |||||||| || |||||| | ||||||| |||| |
Sbjct 174661 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCTAGCGATGCGCTCGAAGA 174720
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 174721 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCCGTGTCGGGGT 174780
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559
|||||||||| ||||||||||| | | || ||||||
Sbjct 174781 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 174817
>seq116971
Length=804141
Score = 158 bits (174), Expect = 1e-32
Identities = 156/202 (77%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | ||| |||||||| ||||| | |||||| | ||
Sbjct 324931 GCTTGGCCAGCTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGCACCTCGCGGGACGTGA 324872
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| | |||||||| ||| ||||||| || ||||||| |||| |
Sbjct 324871 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAA 324812
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| |||||||| ||| ||||
Sbjct 324811 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGT 324752
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 324751 GCACCTGCTTCAGCACCTTGTA 324730
Score = 158 bits (174), Expect = 1e-32
Identities = 156/202 (77%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | ||| |||||||| ||||| | |||||| | ||
Sbjct 329350 GCTTGGCCAGCTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGCACCTCGCGGGACGTGA 329409
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| | |||||||| ||| ||||||| || ||||||| |||| |
Sbjct 329410 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAA 329469
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| |||||||| ||| ||||
Sbjct 329470 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGT 329529
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 329530 GCACCTGCTTCAGCACCTTGTA 329551
>seq8896
Length=37314
Score = 158 bits (174), Expect = 1e-32
Identities = 165/217 (76%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | |||||||||||| ||||||||||| || | ||
Sbjct 26502 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 26443
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| | |||||||| || |||||| ||||||| |||| |
Sbjct 26442 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 26383
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| || |||||| ||||||||
Sbjct 26382 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAAATGCCCGTGTCGGGGT 26323
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559
|||||||||| ||||||||||| | | || ||||||
Sbjct 26322 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 26286
>seq44436
Length=465823
Score = 140 bits (154), Expect = 4e-27
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407
|||||||| || ||| | |||||||||||| ||||||||||| |||| ||| ||
Sbjct 192900 GCCAGTTCCCCCGGCAGCAGCAGGCGCACGGCTGTCTGGATCTCCCGCGACGTGATAGTA 192959
Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467
|||||||| | |||||||| || |||||| ||||||| |||| |||||
Sbjct 192960 GAACGCTTGTTGTAATGCGCCAGGCGCGAAGCCTCGCCTGCGATGCGCTCGAAGATGTCA 193019
Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527
|| |||||||||||||||| ||| | |||| ||||||||| |||||| ||||||
Sbjct 193020 TTAACAAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGATGCACC 193079
Query 1254528 TGCTTGAGCACCTTGTA 1254544
||||| ||||| |||||
Sbjct 193080 TGCTTCAGCACTTTGTA 193096
Score = 116 bits (128), Expect = 5e-20
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407
|||| || ||| ||| | |||||||||||| ||||||||||| || | ||| ||
Sbjct 138890 GCCAACTCCCCGGGCAGTAGCAGGCGCACGGCTGTCTGGATCTCCCGTGAAGTGATGGTC 138949
Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467
||||||||| | |||||||| ||| ||||| ||||||| |||| || |||
Sbjct 138950 GAGCGCTTGTTGTAATGCGCCAGGCGGGAAGCCTCCCCTGCGATGCGCTCGAAAATATCG 139009
Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527
|| || || |||||||||| ||| | |||| ||||||||| || ||||||||
Sbjct 139010 TTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTATCCGGGTGCACT 139069
Query 1254528 TGCTTGAGCACCTTGTA 1254544
||||| || ||||||||
Sbjct 139070 TGCTTCAGTACCTTGTA 139086
>seq34771
Length=1253893
Score = 125 bits (138), Expect = 9e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | |||||||||||| ||||||||||| || | ||
Sbjct 1093094 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 1093035
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| | |||||||| || |||||| ||||||| |||| |
Sbjct 1093034 TGGTNGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 1092975
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||| | ||||| || ||||||| ||| | ||| ||||||||| ||| || |
Sbjct 1092974 TGTCTGTCACAAAAGAATTCATGATACTCATGGCCTTTGAGGAGATGCCAGTGTCCGGAT 1092915
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548
|||||||||| ||||| || ||||||
Sbjct 1092914 GCACCTGCTTCAGCACTTTATAGATG 1092889
>seq17733
Length=79199
Score = 107 bits (118), Expect = 2e-17
Identities = 91/112 (81%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 1254448 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGA 1254507
||||||| |||| ||||||||||| ||||||||||||| ||| | |||| ||||
Sbjct 32824 CGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAGA 32765
Query 1254508 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559
||||| |||||||||||||||||| ||||||||||| | | || ||||||
Sbjct 32764 TGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 32713
>seq117011
Length=451335
Score = 86.0 bits (94), Expect = 8e-11
Identities = 97/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | |||||||||||| ||||||||||| || | ||
Sbjct 119258 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 119199
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| | |||||||| || |||||| ||||||| |||| |
Sbjct 119198 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 119139
Query 1254463 TGTCGTTGAC 1254472
||||||||||
Sbjct 119138 TGTCGTTGAC 119129
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6097342892596241
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |