Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq117061 167 3e-35 seq116971 158 1e-32 seq8896 158 1e-32 seq44436 140 4e-27 seq34771 125 9e-23 seq17733 107 2e-17 seq117011 86.0 8e-11 >seq117061 Length=280271 Score = 167 bits (184), Expect = 3e-35 Identities = 167/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 174601 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 174660 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| | ||||||| |||| | Sbjct 174661 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCTAGCGATGCGCTCGAAGA 174720 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 174721 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCCGTGTCGGGGT 174780 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||| ||||||||||| | | || |||||| Sbjct 174781 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 174817 >seq116971 Length=804141 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| |||||||| ||||| | |||||| | || Sbjct 324931 GCTTGGCCAGCTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGCACCTCGCGGGACGTGA 324872 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| ||||||| || ||||||| |||| | Sbjct 324871 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAA 324812 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| |||||||| ||| |||| Sbjct 324811 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGT 324752 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 324751 GCACCTGCTTCAGCACCTTGTA 324730 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| |||||||| ||||| | |||||| | || Sbjct 329350 GCTTGGCCAGCTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGCACCTCGCGGGACGTGA 329409 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| ||||||| || ||||||| |||| | Sbjct 329410 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAA 329469 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| |||||||| ||| |||| Sbjct 329470 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGT 329529 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 329530 GCACCTGCTTCAGCACCTTGTA 329551 >seq8896 Length=37314 Score = 158 bits (174), Expect = 1e-32 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 26502 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 26443 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 26442 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 26383 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| || |||||| |||||||| Sbjct 26382 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAAATGCCCGTGTCGGGGT 26323 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||| ||||||||||| | | || |||||| Sbjct 26322 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 26286 >seq44436 Length=465823 Score = 140 bits (154), Expect = 4e-27 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||||||| || ||| | |||||||||||| ||||||||||| |||| ||| || Sbjct 192900 GCCAGTTCCCCCGGCAGCAGCAGGCGCACGGCTGTCTGGATCTCCCGCGACGTGATAGTA 192959 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||||| | |||||||| || |||||| ||||||| |||| ||||| Sbjct 192960 GAACGCTTGTTGTAATGCGCCAGGCGCGAAGCCTCGCCTGCGATGCGCTCGAAGATGTCA 193019 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || |||||||||||||||| ||| | |||| ||||||||| |||||| |||||| Sbjct 193020 TTAACAAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGATGCACC 193079 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| ||||| ||||| Sbjct 193080 TGCTTCAGCACTTTGTA 193096 Score = 116 bits (128), Expect = 5e-20 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||| || ||| ||| | |||||||||||| ||||||||||| || | ||| || Sbjct 138890 GCCAACTCCCCGGGCAGTAGCAGGCGCACGGCTGTCTGGATCTCCCGTGAAGTGATGGTC 138949 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| | |||||||| ||| ||||| ||||||| |||| || ||| Sbjct 138950 GAGCGCTTGTTGTAATGCGCCAGGCGGGAAGCCTCCCCTGCGATGCGCTCGAAAATATCG 139009 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || || || |||||||||| ||| | |||| ||||||||| || |||||||| Sbjct 139010 TTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTATCCGGGTGCACT 139069 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| || |||||||| Sbjct 139070 TGCTTCAGTACCTTGTA 139086 >seq34771 Length=1253893 Score = 125 bits (138), Expect = 9e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 1093094 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 1093035 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 1093034 TGGTNGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 1092975 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| | ||||| || ||||||| ||| | ||| ||||||||| ||| || | Sbjct 1092974 TGTCTGTCACAAAAGAATTCATGATACTCATGGCCTTTGAGGAGATGCCAGTGTCCGGAT 1092915 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||| ||||| || |||||| Sbjct 1092914 GCACCTGCTTCAGCACTTTATAGATG 1092889 >seq17733 Length=79199 Score = 107 bits (118), Expect = 2e-17 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 1254448 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGA 1254507 ||||||| |||| ||||||||||| ||||||||||||| ||| | |||| |||| Sbjct 32824 CGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAGA 32765 Query 1254508 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 ||||| |||||||||||||||||| ||||||||||| | | || |||||| Sbjct 32764 TGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 32713 >seq117011 Length=451335 Score = 86.0 bits (94), Expect = 8e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 119258 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 119199 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 119198 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 119139 Query 1254463 TGTCGTTGAC 1254472 |||||||||| Sbjct 119138 TGTCGTTGAC 119129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6097342892596241