Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq97228 136 4e-27
seq7954 116 3e-21
seq117227 109 5e-19
>seq97228
Length=228612
Score = 136 bits (150), Expect = 4e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| || | || || || | || ||||| || |||||||| || ||| || |
Sbjct 211565 GATGCAGATTTTCGTGAAGACCCTTATGGGGAAAACCATCACGCTCGAGGTTGAACCCTC 211624
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| |||||| ||||| |||||||| || ||||||||||| ||||| |||||
Sbjct 211625 GGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGATCA 211684
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| | ||||||| || || || |||||||| ||| | | |||| || || ||
Sbjct 211685 GCAAAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAA 211744
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|||||||||||| || || || || | |||||| || | || || ||
Sbjct 211745 CATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCGTGGTGG 211792
>seq7954
Length=808569
Score = 116 bits (128), Expect = 3e-21
Identities = 156/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||| |||| ||| | || || | || || ||||| || |||||||| || ||| || |
Sbjct 793641 GATGGAGATTTTTGTGAAGACCTTTACAGGGAAAACCATCACGCTCGAGGTTGAACCCTC 793700
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| |||||| | || |||||||| || || |||||||| ||||| |||||
Sbjct 793701 AGACACTATAGAAAATTTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 793760
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| | ||||||| || || || |||||||| ||| | | |||| || || |
Sbjct 793761 GCAAAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAG 793820
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919
|||||||||||| || || || || | |||||| ||
Sbjct 793821 CATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGA 793857
>seq117227
Length=121535
Score = 109 bits (120), Expect = 5e-19
Identities = 157/220 (71%), Gaps = 1/220 (0%)
Strand=Plus/Plus
Query 24700 TACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGC 24759
|| ||| ||||| || | | || || || || ||||| || |||||| | || ||| |
Sbjct 79283 TAAGATTCAGATTTTCGTGAGGAC-CTTACAGGGAAAACCATCACGCTCAAGGTTGAACC 79341
Query 24760 CACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819
| | ||||| |||||| ||||| |||||||| || || |||||||| ||||| ||
Sbjct 79342 CTCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 79401
Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879
| | || | |||||||||| | || |||||||| ||| | | |||| || ||
Sbjct 79402 TGAGCAGAGGCTGATCTTTGCTGCTAAGCAGCTGGAAGATGGCTGTACTTTGTCTGACTA 79461
Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919
|||||||||||||| || || || || | |||||| ||
Sbjct 79462 CAACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGA 79501
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449226279672440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |