Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq97228 136 4e-27 seq7954 116 3e-21 seq117227 109 5e-19 >seq97228 Length=228612 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || | || ||||| || |||||||| || ||| || | Sbjct 211565 GATGCAGATTTTCGTGAAGACCCTTATGGGGAAAACCATCACGCTCGAGGTTGAACCCTC 211624 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||||| ||||| |||||||| || ||||||||||| ||||| ||||| Sbjct 211625 GGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGATCA 211684 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||||| || || || |||||||| ||| | | |||| || || || Sbjct 211685 GCAAAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAA 211744 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| || || || || | |||||| || | || || || Sbjct 211745 CATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCGTGGTGG 211792 >seq7954 Length=808569 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||| |||| ||| | || || | || || ||||| || |||||||| || ||| || | Sbjct 793641 GATGGAGATTTTTGTGAAGACCTTTACAGGGAAAACCATCACGCTCGAGGTTGAACCCTC 793700 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||||| | || |||||||| || || |||||||| ||||| ||||| Sbjct 793701 AGACACTATAGAAAATTTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 793760 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||||| || || || |||||||| ||| | | |||| || || | Sbjct 793761 GCAAAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAG 793820 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||||||| || || || || | |||||| || Sbjct 793821 CATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGA 793857 >seq117227 Length=121535 Score = 109 bits (120), Expect = 5e-19 Identities = 157/220 (71%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 24700 TACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGC 24759 || ||| ||||| || | | || || || || ||||| || |||||| | || ||| | Sbjct 79283 TAAGATTCAGATTTTCGTGAGGAC-CTTACAGGGAAAACCATCACGCTCAAGGTTGAACC 79341 Query 24760 CACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 | | ||||| |||||| ||||| |||||||| || || |||||||| ||||| || Sbjct 79342 CTCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 79401 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 | | || | |||||||||| | || |||||||| ||| | | |||| || || Sbjct 79402 TGAGCAGAGGCTGATCTTTGCTGCTAAGCAGCTGGAAGATGGCTGTACTTTGTCTGACTA 79461 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||||||||| || || || || | |||||| || Sbjct 79462 CAACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGA 79501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449226279672440