Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq16199 98.7 8e-16 >seq16199 Length=3135 Score = 98.7 bits (108), Expect = 8e-16 Identities = 209/311 (67%), Gaps = 1/311 (0%) Strand=Plus/Minus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGA-TGAAACCATC 34373 || || || || || || ||||| || ||||| | ||||| || | |||| ||||| Sbjct 527 AGATCTGTTTCAGGATTCTCACACTCAGGACAAAGAACAAAATTTTTTAATGAATCCATC 468 Query 34374 AAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTT 34433 | || ||| || | |||| | || || || || ||||| || | || || || || Sbjct 467 CAACATGTCTTGCAGCTTATGCGCCTCATGAGATCCATTGACAATATAACGGTCATTCTT 408 Query 34434 GTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGC 34493 ||| | ||| || || || |||||||| || || || || | || || || | | Sbjct 407 AACATCAAACTGGGTCTGTGCTCCCAGCTCACAACCAAAATATTCGGTAGGATACGTTGG 348 Query 34494 CGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTT 34553 || || |||||||||||| | || ||||||||| | || |||||||| || || Sbjct 347 AGGCCGATTAAGCGCCTTGGCAACATCAACCATGTTGACTGTAACTGTCTTGATTCCATT 288 Query 34554 GCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGC 34613 || || | || |||||| | | || ||||| |||||||| |||||| ||| | Sbjct 287 TCCTTTGCTCTCAACCTTGACAATCAAACGGGGCATCTTGTAGCGATAGAACTGGTCTGA 228 Query 34614 CACATTGCGGT 34624 ||| || ||| Sbjct 227 CACGCTGTGGT 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412240973914889