Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq117061 219 7e-51 seq8896 210 3e-48 seq116971 205 1e-46 seq44436 183 5e-40 seq34771 174 2e-37 seq117011 143 4e-28 seq17733 104 4e-16 seq14694 91.5 2e-12 >seq117061 Length=280271 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 174562 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 174621 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| || ||||||||| Sbjct 174622 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTCGAGCGCTTGTTGTAAT 174681 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 174682 GCGCCAGGCGCGACGCCTCGCTAGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 174741 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 174742 TGATGCCCATGGCCTTGGAAGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 174801 Query 1485710 AAAC 1485713 | || Sbjct 174802 ACAC 174805 Score = 122 bits (134), Expect = 1e-21 Identities = 105/130 (81%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 225572 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 225631 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| || ||||||||| Sbjct 225632 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTCGAGCGCTTGTTGTAAT 225691 Query 1485590 GCGCCAGGCG 1485599 |||||||||| Sbjct 225692 GCGCCAGGCG 225701 Score = 120 bits (132), Expect = 5e-21 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 209955 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 209896 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| || ||||||||| Sbjct 209895 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTCGAGCGCTTGTTGTAAT 209836 Query 1485590 GCGCCAGGC 1485598 ||||||||| Sbjct 209835 GCGCCAGGC 209827 Score = 91.5 bits (100), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 211339 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 211398 Query 1485530 TGATCAGGCGCACGG 1485544 | ||||||||||| Sbjct 211399 GCAGCAGGCGCACGG 211413 >seq8896 Length=37314 Score = 210 bits (232), Expect = 3e-48 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 26541 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 26482 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| || ||||||||| Sbjct 26481 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTCGAGCGCTTGTTGTAAT 26422 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| |||| ||||||||||| |||||||||| Sbjct 26421 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 26362 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| || |||||| |||||||||||||||||| |||||||||| Sbjct 26361 TGATGCCCATGGCCTTGGAAGAAATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 26302 Query 1485710 AAAC 1485713 | || Sbjct 26301 ACAC 26298 >seq116971 Length=804141 Score = 205 bits (226), Expect = 1e-46 Identities = 199/256 (78%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| || ||||| || ||||| ||| ||||||| || ||| ||| Sbjct 324970 TGTACTTGGTGACAGCCTTAGTGCCCTCGGACACGGCATGCTTGGCCAGCTCCCCGGGCA 324911 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||| | |||||||| ||| || ||||||||| Sbjct 324910 GCAGCAGACGCACGGCCGTCTGCACCTCGCGGGACGTGATGGTCGAGCGCTTGTTGTAAT 324851 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||||| || ||||||| |||| ||||||||||| |||||||||| Sbjct 324850 GCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAATGTCGTTGACGAACGAGTTCA 324791 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| ||| |||||||||||||| |||||||||| Sbjct 324790 TGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 324731 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 324730 ACACATAGATGGAGTA 324715 Score = 205 bits (226), Expect = 1e-46 Identities = 199/256 (78%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| || ||||| || ||||| ||| ||||||| || ||| ||| Sbjct 329311 TGTACTTGGTGACAGCCTTAGTGCCCTCGGACACGGCATGCTTGGCCAGCTCCCCGGGCA 329370 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||| | |||||||| ||| || ||||||||| Sbjct 329371 GCAGCAGACGCACGGCCGTCTGCACCTCGCGGGACGTGATGGTCGAGCGCTTGTTGTAAT 329430 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||||| || ||||||| |||| ||||||||||| |||||||||| Sbjct 329431 GCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAATGTCGTTGACGAACGAGTTCA 329490 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| ||| |||||||||||||| |||||||||| Sbjct 329491 TGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 329550 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 329551 ACACATAGATGGAGTA 329566 >seq44436 Length=465823 Score = 183 bits (202), Expect = 5e-40 Identities = 187/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| | |||||||| || ||| Sbjct 192856 TGTACTTGGTGACCGCCTTGGTGCCCTCCGACACGGCGTGCTTAGCCAGTTCCCCCGGCA 192915 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | ||| || |||||||| Sbjct 192916 GCAGCAGGCGCACGGCTGTCTGGATCTCCCGCGACGTGATAGTAGAACGCTTGTTGTAAT 192975 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| |||| ||||| || ||||||||||||| Sbjct 192976 GCGCCAGGCGCGAAGCCTCGCCTGCGATGCGCTCGAAGATGTCATTAACAAACGAGTTCA 193035 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||| ||||||||||| ||||| |||| Sbjct 193036 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGATGCACCTGCTTCAGCACTTTGT 193095 Query 1485710 AAAC 1485713 | || Sbjct 193096 ACAC 193099 Score = 161 bits (178), Expect = 2e-33 Identities = 182/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || |||||||| | |||| || ||| ||| Sbjct 138846 TGTACTTGGTGACCGCCTTGGTGCCCTCCGACACGGCGTGTTTAGCCAACTCCCCGGGCA 138905 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | ||| || ||||||||| Sbjct 138906 GTAGCAGGCGCACGGCTGTCTGGATCTCCCGTGAAGTGATGGTCGAGCGCTTGTTGTAAT 138965 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||| ||||||| |||| || ||||| || || ||||||| Sbjct 138966 GCGCCAGGCGGGAAGCCTCCCCTGCGATGCGCTCGAAAATATCGTTCACGAAGGAGTTCA 139025 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| || |||||||| ||||| || ||||||| Sbjct 139026 TGATGCCCATGGCCTTGGACGAGATGCCCGTATCCGGGTGCACTTGCTTCAGTACCTTGT 139085 Query 1485710 AAAC 1485713 | || Sbjct 139086 ACAC 139089 >seq34771 Length=1253893 Score = 174 bits (192), Expect = 2e-37 Identities = 183/241 (76%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 1093133 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 1093074 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| || ||||||||| Sbjct 1093073 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTNGAGCGCTTGTTGTAAT 1093014 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| |||| ||||| | ||||| || |||| Sbjct 1093013 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCTGTCACAAAAGAATTCA 1092954 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || ||||||||| ||| || ||||||||||| ||||| || | Sbjct 1092953 TGATACTCATGGCCTTTGAGGAGATGCCAGTGTCCGGATGCACCTGCTTCAGCACTTTAT 1092894 Query 1485710 A 1485710 | Sbjct 1092893 A 1092893 >seq117011 Length=451335 Score = 143 bits (158), Expect = 4e-28 Identities = 133/169 (79%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 119297 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 119238 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| || ||||||||| Sbjct 119237 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTCGAGCGCTTGTTGTAAT 119178 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGAC 1485638 |||||||||| |||||| ||||||| |||| ||||||||||| Sbjct 119177 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGAC 119129 >seq17733 Length=79199 Score = 104 bits (114), Expect = 4e-16 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 1485614 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGA 1485673 ||||||| |||| ||||||||||| |||||||||||||| ||| | ||| |||| Sbjct 32824 CGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAGA 32765 Query 1485674 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAAC 1485713 ||||| |||||||||||||||||| ||||||||||| || Sbjct 32764 TGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACAC 32725 >seq14694 Length=1798513 Score = 91.5 bits (100), Expect = 2e-12 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || |||||||||||||||||||| || |||||||||| ||| || ||| Sbjct 777124 ACCTCCTCAGCCGTCCAAAAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGG 777183 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTC 796400 || ||||||| || | ||| ||||| | |||||| || Sbjct 777184 TATTGGATGGGAAAGATAACGAAGCGGTGGGGGTTTTC 777221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7903548149529747