Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq117061 219 7e-51
seq8896 210 3e-48
seq116971 205 1e-46
seq44436 183 5e-40
seq34771 174 2e-37
seq117011 143 4e-28
seq17733 104 4e-16
seq14694 91.5 2e-12
>seq117061
Length=280271
Score = 219 bits (242), Expect = 7e-51
Identities = 195/244 (80%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| |||
Sbjct 174562 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 174621
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||||||||| ||||||||||| |||| ||| || |||||||||
Sbjct 174622 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTCGAGCGCTTGTTGTAAT 174681
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| | ||||||| |||| ||||||||||| ||||||||||
Sbjct 174682 GCGCCAGGCGCGACGCCTCGCTAGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 174741
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 174742 TGATGCCCATGGCCTTGGAAGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 174801
Query 1485710 AAAC 1485713
| ||
Sbjct 174802 ACAC 174805
Score = 122 bits (134), Expect = 1e-21
Identities = 105/130 (81%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| |||
Sbjct 225572 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 225631
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||||||||| ||||||||||| |||| ||| || |||||||||
Sbjct 225632 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTCGAGCGCTTGTTGTAAT 225691
Query 1485590 GCGCCAGGCG 1485599
||||||||||
Sbjct 225692 GCGCCAGGCG 225701
Score = 120 bits (132), Expect = 5e-21
Identities = 104/129 (81%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| |||
Sbjct 209955 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 209896
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||||||||| ||||||||||| |||| ||| || |||||||||
Sbjct 209895 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTCGAGCGCTTGTTGTAAT 209836
Query 1485590 GCGCCAGGC 1485598
|||||||||
Sbjct 209835 GCGCCAGGC 209827
Score = 91.5 bits (100), Expect = 2e-12
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| |||
Sbjct 211339 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 211398
Query 1485530 TGATCAGGCGCACGG 1485544
| |||||||||||
Sbjct 211399 GCAGCAGGCGCACGG 211413
>seq8896
Length=37314
Score = 210 bits (232), Expect = 3e-48
Identities = 193/244 (79%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| |||
Sbjct 26541 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 26482
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||||||||| ||||||||||| |||| ||| || |||||||||
Sbjct 26481 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTCGAGCGCTTGTTGTAAT 26422
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| ||||||| |||| ||||||||||| ||||||||||
Sbjct 26421 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 26362
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| || |||||| |||||||||||||||||| ||||||||||
Sbjct 26361 TGATGCCCATGGCCTTGGAAGAAATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 26302
Query 1485710 AAAC 1485713
| ||
Sbjct 26301 ACAC 26298
>seq116971
Length=804141
Score = 205 bits (226), Expect = 1e-46
Identities = 199/256 (78%), Gaps = 0/256 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| ||||| || ||||| || ||||| ||| ||||||| || ||| |||
Sbjct 324970 TGTACTTGGTGACAGCCTTAGTGCCCTCGGACACGGCATGCTTGGCCAGCTCCCCGGGCA 324911
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| |||||||| ||||| | |||||||| ||| || |||||||||
Sbjct 324910 GCAGCAGACGCACGGCCGTCTGCACCTCGCGGGACGTGATGGTCGAGCGCTTGTTGTAAT 324851
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
||||||||||| ||||||| || ||||||| |||| ||||||||||| ||||||||||
Sbjct 324850 GCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAATGTCGTTGACGAACGAGTTCA 324791
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| |||||||| ||| |||||||||||||| ||||||||||
Sbjct 324790 TGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 324731
Query 1485710 AAACAAAGGACGAGTA 1485725
| ||| || |||||
Sbjct 324730 ACACATAGATGGAGTA 324715
Score = 205 bits (226), Expect = 1e-46
Identities = 199/256 (78%), Gaps = 0/256 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| ||||| || ||||| || ||||| ||| ||||||| || ||| |||
Sbjct 329311 TGTACTTGGTGACAGCCTTAGTGCCCTCGGACACGGCATGCTTGGCCAGCTCCCCGGGCA 329370
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| |||||||| ||||| | |||||||| ||| || |||||||||
Sbjct 329371 GCAGCAGACGCACGGCCGTCTGCACCTCGCGGGACGTGATGGTCGAGCGCTTGTTGTAAT 329430
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
||||||||||| ||||||| || ||||||| |||| ||||||||||| ||||||||||
Sbjct 329431 GCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAATGTCGTTGACGAACGAGTTCA 329490
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| |||||||| ||| |||||||||||||| ||||||||||
Sbjct 329491 TGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 329550
Query 1485710 AAACAAAGGACGAGTA 1485725
| ||| || |||||
Sbjct 329551 ACACATAGATGGAGTA 329566
>seq44436
Length=465823
Score = 183 bits (202), Expect = 5e-40
Identities = 187/244 (77%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| || ||||||||| | |||||||| || |||
Sbjct 192856 TGTACTTGGTGACCGCCTTGGTGCCCTCCGACACGGCGTGCTTAGCCAGTTCCCCCGGCA 192915
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||||||||| ||||||||||| || | ||| || ||||||||
Sbjct 192916 GCAGCAGGCGCACGGCTGTCTGGATCTCCCGCGACGTGATAGTAGAACGCTTGTTGTAAT 192975
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| ||||||| |||| ||||| || |||||||||||||
Sbjct 192976 GCGCCAGGCGCGAAGCCTCGCCTGCGATGCGCTCGAAGATGTCATTAACAAACGAGTTCA 193035
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| |||||| ||||||||||| ||||| ||||
Sbjct 193036 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGATGCACCTGCTTCAGCACTTTGT 193095
Query 1485710 AAAC 1485713
| ||
Sbjct 193096 ACAC 193099
Score = 161 bits (178), Expect = 2e-33
Identities = 182/244 (75%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| || |||||||| | |||| || ||| |||
Sbjct 138846 TGTACTTGGTGACCGCCTTGGTGCCCTCCGACACGGCGTGTTTAGCCAACTCCCCGGGCA 138905
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||||||||| ||||||||||| || | ||| || |||||||||
Sbjct 138906 GTAGCAGGCGCACGGCTGTCTGGATCTCCCGTGAAGTGATGGTCGAGCGCTTGTTGTAAT 138965
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
||||||||||| ||||| ||||||| |||| || ||||| || || |||||||
Sbjct 138966 GCGCCAGGCGGGAAGCCTCCCCTGCGATGCGCTCGAAAATATCGTTCACGAAGGAGTTCA 139025
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| || |||||||| ||||| || |||||||
Sbjct 139026 TGATGCCCATGGCCTTGGACGAGATGCCCGTATCCGGGTGCACTTGCTTCAGTACCTTGT 139085
Query 1485710 AAAC 1485713
| ||
Sbjct 139086 ACAC 139089
>seq34771
Length=1253893
Score = 174 bits (192), Expect = 2e-37
Identities = 183/241 (76%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| |||
Sbjct 1093133 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 1093074
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||||||||| ||||||||||| |||| ||| || |||||||||
Sbjct 1093073 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTNGAGCGCTTGTTGTAAT 1093014
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| ||||||| |||| ||||| | ||||| || ||||
Sbjct 1093013 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCTGTCACAAAAGAATTCA 1092954
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | || ||||||||| ||| || ||||||||||| ||||| || |
Sbjct 1092953 TGATACTCATGGCCTTTGAGGAGATGCCAGTGTCCGGATGCACCTGCTTCAGCACTTTAT 1092894
Query 1485710 A 1485710
|
Sbjct 1092893 A 1092893
>seq117011
Length=451335
Score = 143 bits (158), Expect = 4e-28
Identities = 133/169 (79%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| |||
Sbjct 119297 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 119238
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||||||||| ||||||||||| |||| ||| || |||||||||
Sbjct 119237 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTCGAGCGCTTGTTGTAAT 119178
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGAC 1485638
|||||||||| |||||| ||||||| |||| |||||||||||
Sbjct 119177 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGAC 119129
>seq17733
Length=79199
Score = 104 bits (114), Expect = 4e-16
Identities = 83/100 (83%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 1485614 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGA 1485673
||||||| |||| ||||||||||| |||||||||||||| ||| | ||| ||||
Sbjct 32824 CGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAGA 32765
Query 1485674 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAAC 1485713
||||| |||||||||||||||||| ||||||||||| ||
Sbjct 32764 TGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACAC 32725
>seq14694
Length=1798513
Score = 91.5 bits (100), Expect = 2e-12
Identities = 79/98 (81%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362
|||||||| || |||||||||||||||||||| || |||||||||| ||| || |||
Sbjct 777124 ACCTCCTCAGCCGTCCAAAAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGG 777183
Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTC 796400
|| ||||||| || | ||| ||||| | |||||| ||
Sbjct 777184 TATTGGATGGGAAAGATAACGAAGCGGTGGGGGTTTTC 777221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7903548149529747
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