Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq75922 111 1e-19 seq66478 111 1e-19 seq97228 86.0 4e-12 >seq75922 Length=371470 Score = 111 bits (122), Expect = 1e-19 Identities = 166/234 (71%), Gaps = 9/234 (4%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | |||| ||| ||||| ||||| || || || Sbjct 193726 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 193785 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC-----TT 34865 || |||| |||| ||||| ||||| ||||| |||||||| | || ||||| Sbjct 193786 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCGGGGAGA 193845 Query 34866 GCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGC 34923 | || | |||||||| || | || || ||||| || || || || ||| ||| Sbjct 193846 GGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGAC--ATTCTCAATGGAGTCACTGGG 193903 Query 34924 CTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | ||| |||||||| | || |||||||| | ||||||||||| Sbjct 193904 CTCCACTTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCATGAAGATCTGCAT 193957 >seq66478 Length=146994 Score = 111 bits (122), Expect = 1e-19 Identities = 158/219 (72%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 |||||| ||| |||| | |||| ||| ||||| ||||| ||||| || || ||| | Sbjct 11456 CCTCAG-ACCTGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCC 11398 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| ||||| ||||| || || ||||| ||||| |||||||| | || | |||| || Sbjct 11397 ATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTT 11338 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTT 34939 | | || || ||||| || || || | ||| ||| || || || | ||| Sbjct 11337 ACCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTG 11280 Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||||||| || || |||||||| ||||||||||||||| Sbjct 11279 ATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 11241 >seq97228 Length=228612 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||| || || |||| |||| |||||| |||||||| ||||| || | | || || Sbjct 211780 CTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCA 211721 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||| ||||| || ||||||||||| | |||||| || | || | || || || Sbjct 211720 TCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTTA 211661 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | |||| | || || || || || | || ||| Sbjct 211660 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 211601 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||| | |||||||| || || |||||||| Sbjct 211600 GTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 211566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325218963081887