Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq75922 111 1e-19
seq66478 111 1e-19
seq97228 86.0 4e-12
>seq75922
Length=371470
Score = 111 bits (122), Expect = 1e-19
Identities = 166/234 (71%), Gaps = 9/234 (4%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||||| | ||||||||||| | |||| ||| ||||| ||||| || || ||
Sbjct 193726 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 193785
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC-----TT 34865
|| |||| |||| ||||| ||||| ||||| |||||||| | || |||||
Sbjct 193786 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCGGGGAGA 193845
Query 34866 GCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGC 34923
| || | |||||||| || | || || ||||| || || || || ||| |||
Sbjct 193846 GGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGAC--ATTCTCAATGGAGTCACTGGG 193903
Query 34924 CTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| || || | ||| |||||||| | || |||||||| | |||||||||||
Sbjct 193904 CTCCACTTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCATGAAGATCTGCAT 193957
>seq66478
Length=146994
Score = 111 bits (122), Expect = 1e-19
Identities = 158/219 (72%), Gaps = 5/219 (2%)
Strand=Plus/Minus
Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821
|||||| ||| |||| | |||| ||| ||||| ||||| ||||| || || ||| |
Sbjct 11456 CCTCAG-ACCTGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCC 11398
Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881
||| ||||| ||||| || || ||||| ||||| |||||||| | || | |||| ||
Sbjct 11397 ATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTT 11338
Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTT 34939
| | || || ||||| || || || | ||| ||| || || || | |||
Sbjct 11337 ACCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTG 11280
Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|||||||| || || |||||||| |||||||||||||||
Sbjct 11279 ATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 11241
>seq97228
Length=228612
Score = 86.0 bits (94), Expect = 4e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822
|||| || || |||| |||| |||||| |||||||| ||||| || | | || ||
Sbjct 211780 CTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCA 211721
Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882
|| ||||| ||||| || ||||||||||| | |||||| || | || | || || ||
Sbjct 211720 TCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTTA 211661
Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
|| | || || || || | |||| | || || || || || | || |||
Sbjct 211660 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 211601
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || ||| | |||||||| || || ||||||||
Sbjct 211600 GTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 211566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325218963081887
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |