Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq97228 82.4 6e-11 >seq97228 Length=228612 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||||||||| | || |||||||| || || || | || ||||| |||||||| Sbjct 211659 GATAAAGAAGGAATTCCTCCTGATCAGCAAAGGCTGATCTTCGCTGGTAAGCAGCTGGAA 211718 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | || || | ||||||||||||||||||||||| || | || | |||||| Sbjct 211719 GATGGCCGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTG 211778 Query 107769 AGATTGCGAGGGGGAAATAATAAAA 107793 ||| | || || || ||| |||| Sbjct 211779 AGACTTCGTGGTGGTGCTAAGAAAA 211803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398296490721997