Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq27438 196 4e-44 seq76224 122 6e-22 seq87143 104 2e-16 seq104799 100 2e-15 seq22415 89.7 4e-12 seq27390 86.0 5e-11 >seq27438 Length=395273 Score = 196 bits (216), Expect = 4e-44 Identities = 787/1230 (64%), Gaps = 42/1230 (3%) Strand=Plus/Minus Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | |||||||| | ||| |||||| || |||||||||||||| | || | Sbjct 215283 GTCATGACTCCACCAGCAGCTTCAGTACCAAGGGAGAGAGGAGTGACATCCAAGAGCAGC 215224 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || |||| || ||| | | ||| ||||| ||||| || | ||| |||||| Sbjct 215223 AAATCCTGAATGTTCTCAGACTTGTCTCCAGATAGAATGGCTGCCTGGACAGCTGCACCA 215164 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 || ||||||||||||| || |||| | | ||| |||| ||| |||||||| || | | Sbjct 215163 TAAGCAACAGCTTCATTGGGGTTAATGCTCTTATTCAGTTCTTTTCCATTGAAGAAGTCT 215104 Query 281843 GAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 ||||| | ||| | ||| | || | | || || || || | | Sbjct 215103 TGCAGAAGCT-TCTGAATCTTGAGGATTCTGGTAGAACCACCCACCA------------G 215057 Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGC 281961 | |||||| || || ||||| ||| | | | ||||| || | || ||| | Sbjct 215056 GATCTGTGACTTGTCTAGTTTGACATCTCAAAGGGCCTTTTCCACATGGTCCAGAGTGCC 214997 Query 281962 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-- 282019 || |||| ||| | | | |||||| ||| ||| || |||| || | |||| Sbjct 214996 TCGGAACAGGTCAGCATTTAATTCTTCAAATCGAGCACTGGTAA---TGGAAGTATAGAA 214940 Query 282020 -TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG--T 282076 || ||||| || ||| |||||||| ||||| | | || || ||| || || | Sbjct 214939 GTCGATTCCCTCATACAGAGAATCAATCTCAATACTGGCCTGGGTGCTAGAGGAGAGGGT 214880 Query 282077 GCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTGATTG 282132 |||| ||||| |||||||| || | | || | | ||| | | || | || Sbjct 214879 GCAC--TTAGCCCGTTCACAGGCAGCACGCAGATGCCTGACAGCTCTCTTGTTCTCACTG 214822 Query 282133 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGA 282190 || ||| || | |||| || || || ||| | ||| | || | | Sbjct 214821 ATG----TCTTCCTTGTGCTTTCGATTAAACTCAGCAATGAA--ATGGTTGACTATTGGG 214768 Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250 |||||||| ||||| || ||||| | || | ||| | || | | |||||| |||| | Sbjct 214767 TTATCAAAGTCTTCTCCACCCAAGTGGGTGTCTCCAGCTGTTGATTTTACTTCAAAAATT 214708 Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 ||||| |||| || | | | |||| | || ||||| |||| |||||||| || Sbjct 214707 CCATCCTCAATAGTGAGGATTGACACATTAAAAGTACCACCTCCCAAGTCAAAAATCAGC 214648 Query 282311 ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370 |||||| |||| | || ||||| | ||||| |||| |||||||||||||||| Sbjct 214647 ACATTCCTTTCAGCTCCAACCTTCTTATCTAACCCATAAGCAATAGCAGCAGCAGTTGGT 214588 Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430 ||||| ||||||| | ||||| || |||||||| |||| |||||||| || ||||| Sbjct 214587 TCATTGATAATTCAAAGCACATTGAGGCCAGCAATAGTTCCAGCATCTTTTGTTGCTTGC 214528 Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCA 282490 | || ||||| | || | || | || || | || |||| || || || ||| Sbjct 214527 CACTGAGAATCACTGAAGCAAGCTGACACTGTGACCACAGCATTGGTAACCGTCTTCCCA 214468 Query 282491 ATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGA-AATTTGTTCTGG 282549 | ||| || ||| ||| | ||| || ||| || || || || | | | | || Sbjct 214467 AGATAGGCTTCTGCAATTTCCTCCATCTTTATTAGAACCACAGAGGACACCTCCTCCGGG 214408 Query 282550 AGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAAT----ATGGTTTATTACCAA 282605 | | | | ||| | |||| || ||||| | | ||| | | || Sbjct 214407 TGGAAACTTTTTGTCTCTCCTTTG-TACTCTACTTGGACCTTGGCCTGGCCTGTCTGCAT 214349 Query 282606 CATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAAT 282665 |||| | || |||| ||||| | | |||||| || |||||| |||| ||| Sbjct 214348 CATTCACCACCATAAAGGGCCAGTGCTACATATCAGACTGAACAACAGAATCATCAAACC 214289 Query 282666 CTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGAT 282725 | ||||| | |||| |||||||||| || ||||| || || | |||| | |||| Sbjct 214288 TACATCCAATCAGATGTTTGGCATCAAAAACTGTGTTGGTGGGGTTCATTGCAACCTGAT 214229 Query 282726 ATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTG 282785 || | | ||| ||||| || |||| | || ||||| | |||||| ||| || | Sbjct 214228 TCTTCGAGGTATCCCCAATTAGTCATTCTTTGTCAGTAAAAGCAACATAGCTTGGTGTGG 214169 Query 282786 TGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 282845 | || || | || ||||| ||||| || || || || |||| || | ||||| |||| Sbjct 214168 TTCGGTTCGCCTGGTCATTGGCAATTATCTCCACCTTTCCATGCTGAAAAACACCCACAC 214109 Query 282846 AACTAAAAGTTGTTCCTAAATCAATACCAA 282875 | |||| || || | |||||| |||| Sbjct 214108 AGGAGTAAGTGGTGCCAAGATCAATGCCAA 214079 >seq76224 Length=91619 Score = 122 bits (134), Expect = 6e-22 Identities = 235/347 (68%), Gaps = 0/347 (0%) Strand=Plus/Plus Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250 || ||||| ||||| || ||||| | || | ||| | || | | | |||| |||| | Sbjct 5872 TTGTCAAAGTCTTCTCCACCCAAATGGGTGTCTCCAGCAGTTGATTTGACTTCAAAAATT 5931 Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 ||||| |||| || | | | |||||| || ||||| ||| |||||||| ||| Sbjct 5932 CCATCCTCAATAGTGAGGATTGACACATCAAAAGTACCACCTCCCTAGTCAAAAATCAGT 5991 Query 282311 ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370 |||||| |||| | || ||||| | |||| |||| |||||||||||||||| Sbjct 5992 ACATTCCTTTCAGCTCCAACCTTCTTATCTAACACATAAGCAATAGCAGCAGCAGTTGGT 6051 Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430 ||||| ||||||| | ||||| || |||||| |||| ||| |||| || || ||| Sbjct 6052 TCATTGATAATTCGAAGCACATTGAGGTTAGCAATAGTTCCAGCAACTTTTGTTGCCTGT 6111 Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCA 282490 | || || | || || || || || || || | || |||| || || || ||| Sbjct 6112 CGCTGAGACTTATTGAAGTAAGCTGGCACTGTGACCACAGCATTGGTAACCATCTTCCCA 6171 Query 282491 ATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGA 282537 | ||| || ||| ||| ||||| || | | || ||| || || Sbjct 6172 AGATAGGCTTCTGCAATTTCCTTCATCTTCATCAGAACCATAGAAGA 6218 >seq87143 Length=1077445 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || ||||| | ||||| |||| ||||||||||||||| ||||| ||||||| | ||| Sbjct 611761 TTCTTATCTAACCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATAATTCGAAGCACA 611702 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| |||| |||||||| || || |||| || ||||| || || || Sbjct 611701 TTGAGGCCAGCAATAGTTCCAGCATCTTTTGTTGCCTGTCGCTGAGAATCATTGAAGTAA 611642 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || || || | || |||| Sbjct 611641 GCTGGCACTGTGACCACAGCAT 611620 >seq104799 Length=2130 Score = 100 bits (110), Expect = 2e-15 Identities = 272/414 (66%), Gaps = 2/414 (0%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| ||||| || || ||||||||||| | ||||| ||||||||||| ||||| || Sbjct 1678 GCAGAAACATTGAGGATGCCATTGGCATCAATGTCAAAAGTGACTTCAATCTGAGGAACA 1737 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | || || || || ||| | ||| |||| || || ||||| ||| Sbjct 1738 CCATGGGGTGCTGGAGGTATGCCTGTAAGTACAAAGTTTCCAAGCAGGTTGTTATCCTTA 1797 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | | |||||| || | | || || || ||| || || || ||||| Sbjct 1798 GTCATGGCCCTTTCACCTTCATACACCTGAATNAGCACACCAGGCTGGTTGTCAGAATAG 1857 Query 281606 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 || || || |||| | | || ||| || || || || | | || | | || Sbjct 1858 GTGGTGAACG-TCTGTGTCTGCTTGGTAGGGATGGTGGTATTGCGCTTGATGAGGATAGT 1916 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| | |||||||| | ||| | |||||| || ||||||||||||| | || | | Sbjct 1917 CATGACTCCACCAGCAGCTTCAATACCAAGGGAGAGAGGAGTGACATTCAAGAGCAGCAA 1976 Query 281725 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 281784 || |||| || ||| | | || || || ||||| || | ||| |||||||| Sbjct 1977 ATCCTGAACATTCTCAGACTTGTCTGCAGACAGTATGGCTGCCTGGACAGCTGCACCATA 2036 Query 281785 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 281838 ||||||||||||||||| |||| | | || |||| ||| |||||||| || Sbjct 2037 AGCAACAGCTTCATCAGGGTTAATGCTCTTCTTCAGTTCTTTTCCATTGAAGAA 2090 >seq22415 Length=1348 Score = 89.7 bits (98), Expect = 4e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| ||||| || |||| ||||| ||||| ||||||||| | || || | ||||| Sbjct 916 TGTTGTAGCTACTGTAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAAAGTTAT 975 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || ||||| ||| | || ||| ||||| || || || |||||||| || || Sbjct 976 TCATTATGGTGCTCCTAAGGAAATGGAATCCTATTACCAGGAGATCGGTAGAGCTGGCCG 1035 Query 131296 TGATGGA 131302 ||||||| Sbjct 1036 TGATGGA 1042 >seq27390 Length=739068 Score = 86.0 bits (94), Expect = 5e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 400295 AATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTA 400354 ||||||| || || ||||| || ||||| ||||| ||||| | || | || |||||| Sbjct 723490 AATGTACACTTATCTTGACTGAAGGAGACTCAGCCAAAACTCTGGCAGTTTCAGGCCTTG 723431 Query 400355 ATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTA 400414 ||| |||||||||| | ||||| || || || |||||||||||| | | ||||| Sbjct 723430 GTGTAGTTGGAAGAGACAAATATGGGGTATTTCCTCTTAGAGGAAAAATACTCAATGTGC 723371 Query 400415 GGGATGCTAGTCCTAAA 400431 | || ||| || |||| Sbjct 723370 GAGAAGCTTCTCATAAA 723354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3734769690170298