Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq66478 143 5e-29
seq7954 118 2e-21
seq97228 114 3e-20
seq117227 105 1e-17
>seq66478
Length=146994
Score = 143 bits (158), Expect = 5e-29
Identities = 154/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666
|||||| || || |||||||| || || || ||||| ||| | | || ||||| || ||
Sbjct 11445 GTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCCAGCTG 11386
Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726
|| ||||||||||| |||| || || || || || || | || ||| | || |||||
Sbjct 11385 CTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGGATCTT 11326
Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
|| || ||||| ||||| || ||| | || || ||||||| || || |||||||||||
Sbjct 11325 GGCCTTGACATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTGATGGTCTTGCCTGT 11266
Query 82787 CAACGTCTTTACAAATATCTGCAT 82810
|| ||||| ||||| ||||||||
Sbjct 11265 CAGGGTCTTCACAAAGATCTGCAT 11242
Score = 123 bits (136), Expect = 5e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| ||||||| ||| | || | |||||| || || |||||||| || || || |||||
Sbjct 11240 CCACCTCTCAGACGGAAGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 11181
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | || |||| || || || ||||||||||| |||| || || || || ||
Sbjct 11180 AGAGTGCAGCCATCTTTCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 11121
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| | || ||||| || ||||| || || ||||| ||||| || ||| | || || ||
Sbjct 11120 ATGTCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 11061
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|| | || || |||||||| |||| ||||| | || || | ||||
Sbjct 11060 TCNAGGGTGATGGTCTTGCCGGTCAGGGTCTTCATGAAGATTTTCATT 11013
>seq7954
Length=808569
Score = 118 bits (130), Expect = 2e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| || || || || || || || | || ||||| | | | | || ||||| || ||
Sbjct 793844 TGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGC 793785
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| ||||| ||||| || ||||| ||||| ||||| |||||||||||||| || |||||
Sbjct 793784 TTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 793725
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| || | |||||| || || || ||||| || || | || || || || |||||
Sbjct 793724 GCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCTGTA 793665
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
|| ||||| ||||| |||| |||
Sbjct 793664 AAGGTCTTCACAAAAATCTCCAT 793642
>seq97228
Length=228612
Score = 114 bits (126), Expect = 3e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| || || || || || || || || || ||||| | | | | || ||||| || ||
Sbjct 211768 TGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGC 211709
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| ||||| ||||| || ||||| ||||| ||||| |||||||| ||||| || |||||
Sbjct 211708 TTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGGATCTTG 211649
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| ||||||||||| || || || ||||| || || | || || || || || |
Sbjct 211648 GCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCATA 211589
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
| ||||| || || ||||||||
Sbjct 211588 AGGGTCTTCACGAAAATCTGCAT 211566
>seq117227
Length=121535
Score = 105 bits (116), Expect = 1e-17
Identities = 146/203 (72%), Gaps = 1/203 (0%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| || || || || || || || || || ||||| | | | | || ||||| || ||
Sbjct 79488 TGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAGCCATCTTCCAGCTGC 79429
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||||| || || || | ||| ||||| |||||||||||||| || |||||
Sbjct 79428 TTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 79369
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| ||||||||||| || || || ||||| || | | || || || || |||||
Sbjct 79368 GCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGTGATGGTTTTCCCTGT- 79310
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
|| ||| | || || ||||| ||
Sbjct 79309 AAGGTCCTCACGAAAATCTGAAT 79287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 980325528127447
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |