Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq87317 84.2 4e-11 >seq87317 Length=177793 Score = 84.2 bits (92), Expect = 4e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438 || || |||||||||| | |||| ||||| | || || || |||||||||||||| || Sbjct 73784 GCCTTGTGGTGGTACTTTGTATCAAAAGGAGTTGAGTATTTGGATACAGTGTTTTTTATC 73843 Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498 || ||||| || ||||| ||| || || || || || ||||| | ||| ||||| Sbjct 73844 CTGAGGAAGAAAAACAATCAGGTTTCTTTCCTTCATGTGTACCATCACTGTACCATGTTC 73903 Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 || | | ||| | || || || ||| | ||||| || || Sbjct 73904 ACACTGTGGTGGATTGGAATCAAGTGGGTGGCAGGTGGCCA 73944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902063163685280