Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq66478 120 3e-22
seq75922 118 1e-21
seq66268 114 1e-20
seq27123 91.5 1e-13
seq97228 87.8 2e-12
>seq66478
Length=146994
Score = 120 bits (132), Expect = 3e-22
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||||||||| || ||||| || | ||| | || | |||||||||||
Sbjct 11211 GGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTTCAGCTGCTTGCC 11152
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | ||||| ||||||||||| || |||||| | || || || |||||| |||
Sbjct 11151 AGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTATCCTGGATCTTGGCCTT 11092
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | ||||| ||||| |||||||||| || | ||||| ||| ||||||||||| ||
Sbjct 11091 GACATTCTCAATGGTGTCACTGGGCTCCACCTCNAGGGTGATGGTCTTGCCGGTCAGGGT 11032
Query 133643 TTTTACGAAAATCTGCAT 133660
|| | ||| || | |||
Sbjct 11031 CTTCATGAAGATTTTCAT 11014
Score = 120 bits (132), Expect = 3e-22
Identities = 146/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||||||||| || ||||| || | ||| | || || |||||||||||
Sbjct 11439 GGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCCAGCTGCTTGCC 11380
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | ||||| ||||||||||| || |||||| | || || | |||||| |||
Sbjct 11379 AGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGGATCTTGGCCTT 11320
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | ||||| ||||| |||| ||||| || | ||||| ||| ||||| ||||| ||
Sbjct 11319 GACATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTGATGGTCTTGCCTGTCAGGGT 11260
Query 133643 TTTTACGAAAATCTGCATG 133661
|| || || |||||||||
Sbjct 11259 CTTCACAAAGATCTGCATG 11241
>seq75922
Length=371470
Score = 118 bits (130), Expect = 1e-21
Identities = 150/204 (74%), Gaps = 7/204 (3%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||||||||| || |||||||| | ||| | | | || || ||||||||||
Sbjct 193755 GGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 193813
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGG-----GAGGGATGCCTTCCTTGTCGGTGATCTT 133576
| || | || |||| ||| ||||||| | |||||||| ||||| || ||||||
Sbjct 193814 CGGCAAAGATCAGCCTCTGTTGGTCGGGGAGAGGGGGATGCCCTCCTTATCCTGGATCTT 193873
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||||| | ||||| | ||| |||||||||| || | ||||| ||| |||| |||
Sbjct 193874 GGCCTTGACATTCTCAATGGAGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCTGGT 193933
Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660
||| || || | ||| ||||||||
Sbjct 193934 CAGGGTCTTCATGAAGATCTGCAT 193957
>seq66268
Length=907216
Score = 114 bits (126), Expect = 1e-20
Identities = 146/201 (73%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516
||| | | ||||| ||||||| | ||||| || || ||| ||||| |||||
Sbjct 480600 ATGCAAGATGGACCCTTTCTGGACGTTGTAGTCCGACAGAGTGCCGCCATCCTCCAGCTG 480541
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
|||||| || | || |||| |||||| || || |||||||||||||||| ||||||
Sbjct 480540 CTTGCCAGCAAATATCAGCCTCTGCTGCTCAGGTAGGATGCCTTCCTTGTCTTGGATCTT 480481
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||||| | ||||| ||||| ||||||| || || | |||| ||| ||||| ||
Sbjct 480480 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGT 480421
Query 133637 CAGAGTTTTTACGAAAATCTG 133657
||| || || ||||| |||||
Sbjct 480420 CAGGGTCTTCACGAAGATCTG 480400
>seq27123
Length=1658509
Score = 91.5 bits (100), Expect = 1e-13
Identities = 143/200 (72%), Gaps = 5/200 (3%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||||||||| || ||||| || || || | | | ||||| |||| |||||
Sbjct 191274 GGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTATGGCCA-TCCTCCAGCT-CTTGC 191331
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| | | |||| ||||||||| || ||||||||||| ||||| |||||| ||
Sbjct 191332 TGACAAATACCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCTTGGATCTTAGCCT 191391
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
|| | || | |||||| || ||||||| | || |||| ||| ||| | ||||| |
Sbjct 191392 TGGCATTCTTGATGGTGTCGCTGAGCTCCACCTGGA--GTGATGGTCTTGTCTGTCAGGG 191449
Query 133642 TTTTTACGAAAATCTGCATG 133661
|| | || || |||||||||
Sbjct 191450 TTGTCACCAAGATCTGCATG 191469
>seq97228
Length=228612
Score = 87.8 bits (96), Expect = 2e-12
Identities = 144/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | ||||||||| || || || ||||| || || || | | | || || ||||
Sbjct 211769 ATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCA-TCTTCCAGCT 211711
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
|||| || ||| | || |||| ||||| || ||||| || ||||| || || |||||
Sbjct 211710 GCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGGATCT 211651
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||| | | || | ||||| | ||| || || |||| |||| |||||| ||
Sbjct 211650 TGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCA 211591
Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660
| || || || ||||||||||||||
Sbjct 211590 TAAGGGTCTTCACGAAAATCTGCAT 211566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482699457610520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |