Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq66478 120 3e-22 seq75922 118 1e-21 seq66268 114 1e-20 seq27123 91.5 1e-13 seq97228 87.8 2e-12 >seq66478 Length=146994 Score = 120 bits (132), Expect = 3e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| || ||||| || | ||| | || | ||||||||||| Sbjct 11211 GGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTTCAGCTGCTTGCC 11152 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| ||||||||||| || |||||| | || || || |||||| ||| Sbjct 11151 AGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTATCCTGGATCTTGGCCTT 11092 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| |||||||||| || | ||||| ||| ||||||||||| || Sbjct 11091 GACATTCTCAATGGTGTCACTGGGCTCCACCTCNAGGGTGATGGTCTTGCCGGTCAGGGT 11032 Query 133643 TTTTACGAAAATCTGCAT 133660 || | ||| || | ||| Sbjct 11031 CTTCATGAAGATTTTCAT 11014 Score = 120 bits (132), Expect = 3e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| || ||||| || | ||| | || || ||||||||||| Sbjct 11439 GGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCCAGCTGCTTGCC 11380 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| ||||||||||| || |||||| | || || | |||||| ||| Sbjct 11379 AGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGGATCTTGGCCTT 11320 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| |||| ||||| || | ||||| ||| ||||| ||||| || Sbjct 11319 GACATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTGATGGTCTTGCCTGTCAGGGT 11260 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 11259 CTTCACAAAGATCTGCATG 11241 >seq75922 Length=371470 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 7/204 (3%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 193755 GGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 193813 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGG-----GAGGGATGCCTTCCTTGTCGGTGATCTT 133576 | || | || |||| ||| ||||||| | |||||||| ||||| || |||||| Sbjct 193814 CGGCAAAGATCAGCCTCTGTTGGTCGGGGAGAGGGGGATGCCCTCCTTATCCTGGATCTT 193873 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | ||||| | ||| |||||||||| || | ||||| ||| |||| ||| Sbjct 193874 GGCCTTGACATTCTCAATGGAGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCTGGT 193933 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || | ||| |||||||| Sbjct 193934 CAGGGTCTTCATGAAGATCTGCAT 193957 >seq66268 Length=907216 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | | ||||| ||||||| | ||||| || || ||| ||||| ||||| Sbjct 480600 ATGCAAGATGGACCCTTTCTGGACGTTGTAGTCCGACAGAGTGCCGCCATCCTCCAGCTG 480541 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || |||| |||||| || || |||||||||||||||| |||||| Sbjct 480540 CTTGCCAGCAAATATCAGCCTCTGCTGCTCAGGTAGGATGCCTTCCTTGTCTTGGATCTT 480481 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | ||||| ||||| ||||||| || || | |||| ||| ||||| || Sbjct 480480 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGT 480421 Query 133637 CAGAGTTTTTACGAAAATCTG 133657 ||| || || ||||| ||||| Sbjct 480420 CAGGGTCTTCACGAAGATCTG 480400 >seq27123 Length=1658509 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/200 (72%), Gaps = 5/200 (3%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || ||||| || || || | | | ||||| |||| ||||| Sbjct 191274 GGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTATGGCCA-TCCTCCAGCT-CTTGC 191331 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | | | |||| ||||||||| || ||||||||||| ||||| |||||| || Sbjct 191332 TGACAAATACCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCTTGGATCTTAGCCT 191391 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 || | || | |||||| || ||||||| | || |||| ||| ||| | ||||| | Sbjct 191392 TGGCATTCTTGATGGTGTCGCTGAGCTCCACCTGGA--GTGATGGTCTTGTCTGTCAGGG 191449 Query 133642 TTTTTACGAAAATCTGCATG 133661 || | || || ||||||||| Sbjct 191450 TTGTCACCAAGATCTGCATG 191469 >seq97228 Length=228612 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| || || || ||||| || || || | | | || || |||| Sbjct 211769 ATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCA-TCTTCCAGCT 211711 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || |||| ||||| || ||||| || ||||| || || ||||| Sbjct 211710 GCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGGATCT 211651 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | || | ||||| | ||| || || |||| |||| |||||| || Sbjct 211650 TGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCA 211591 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || |||||||||||||| Sbjct 211590 TAAGGGTCTTCACGAAAATCTGCAT 211566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482699457610520