Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq87223 233 2e-56
seq112772 127 2e-24
seq66404 122 1e-22
seq34769 111 2e-19
>seq87223
Length=339319
Score = 233 bits (258), Expect = 2e-56
Identities = 649/994 (65%), Gaps = 9/994 (1%)
Strand=Plus/Minus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||||| ||||| | |||| ||| || | |||||||| || | ||| |||
Sbjct 190278 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAANNGGGTCAACATCCA 190219
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178
|| ||||| || ||||| | ||| || | | || |||| | || || |
Sbjct 190218 TGTCAAACTTATTGGCGAAAAAGTGGTGTGTGCGAAGCA---TCCACCGCAAGTCACCAG 190162
Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238
|||||| || || ||||| ||||| || || ||||||||||| || || | || || |
Sbjct 190161 CTCCGAAAACACAGACGGAGCGCACATGGACCCCGCTGCACGGTGGGTAAGGAGCGCCTT 190102
Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298
| ||||| || || |||| |||||||| || ||||||| | ||| | |||||| |
Sbjct 190101 TGGAAACATCACCTTCAAAGTACTGCCACTTGACAAACCTAGCAACAGCATTCATGTCAG 190042
Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358
| ||| ||||| | ||| || | | ||||| || | || | ||||| | ||
Sbjct 190041 ACAAGTCATACTTATGGCTTGAGGGGAGAGAACCAGGGACTTCGGGGATCCTCTGGATAG 189982
Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418
| ||||| |||| || || || || || || |||| | |||||||||||||| ||
Sbjct 189981 TGGCCCAGAGGTACTCATCCGGGCTGTATGTGTCCTGTGCCCACTCCATGAACTTTTGGA 189922
Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478
||| || | ||| | || | || ||| | || | |||||| || || |
Sbjct 189921 TATTTTCATTTTCTAGCACATAGCCTATATATTCCCTACTGACTACAAAGTAGGCACTGC 189862
Query 162479 CAGAAAACACGGG---TATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTA 162535
| ||||| | || | || || ||||| ||| ||||| || ||||||||| |
Sbjct 189861 CTGAAAAAAGAGGAGTTTTGAGT---GGAGGTGGCGCTTTGACTACCCCCGTGTTGGTCA 189805
Query 162536 CCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGT 162595
| | || || |||| ||| | || |||| || || ||| | || | |
Sbjct 189804 GCTTCCCGTCAACGATGGCGTACCGTTTTTTCCATCTTTCCTCCTTGTTCTGAGGCATCT 189745
Query 162596 GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655
|| || ||||| |||| |||| | | ||| |||| | || || ||||| |
Sbjct 189744 TCTCAGTTTCTAGGTTGTTCTCACCCGAGAGTGACTTGAGCTTCCTGACAATTTCTAGGT 189685
Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715
|||| || | || || || | || || ||||| || | || ||||| || | || |
Sbjct 189684 TGGTTTTGATAGGGAAATCCATACCACAAAGATTGATCAAGTACTTCCAGTTTGCACTCA 189625
Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775
|| ||||| |||| | |||||| || || ||||| || |||||||| || || || |
Sbjct 189624 TTCTATACAGGTCCTTCATACAGTTGAGGTCAGCCTGAACCCGACTCCAGGATGCATAAA 189565
Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA 162835
| || |||||||| |||| ||||||||||| || || || || | || |||||||
Sbjct 189564 CAACATTCTCCAACTGGCTGGCCACAAAGACATTATCAAAGCAGGATGCAATGCCCATCA 189505
Query 162836 CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAG 162895
| || | | || || ||||| | || || || | |||||| | ||||||||
Sbjct 189504 CTGCAGCTAAAAAGGATTCCTCTGCTTTTTTGTCCACATGAATGCAGTAGAAATTCTGAG 189445
Query 162896 GGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAG 162955
| |||||||||||||| | || || | ||| || ||||| || || ||||| || |
Sbjct 189444 GCATATAGATGGCCCTCAGGAGCCTATCAAGCATTTCAATCTTGTGATGAACCACTATGG 189385
Query 162956 AATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGGT 163015
|||| || || || || || |||| || ||| || | | || || || |||||
Sbjct 189384 AATATGCAATTGGAAAGTCTACCTCTTCTTTACTAAGGGGCTCTACAATATATTTGCGCA 189325
Query 163016 CCCTCACAAACGCCGCACAGTCCTCCGTCATGTT 163049
|||| | || | ||||| || ||||||||
Sbjct 189324 CCCTGATGAAAGAGGCACAATCACGGGTCATGTT 189291
>seq112772
Length=1341
Score = 127 bits (140), Expect = 2e-24
Identities = 385/583 (66%), Gaps = 15/583 (3%)
Strand=Plus/Minus
Query 176967 TAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGAT 177026
|| || | ||| |||||||| | || | || | ||||| || || || || || |||
Sbjct 1013 TAATCTTCCACATGAATGAATGAATCAGCTGGAATATAATTCTCATAGTTTTCCCTAGAT 954
Query 177027 GTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATA 177086
| ||| || || | ||||| | || |||| || | |||||| ||||| || ||
Sbjct 953 GGTCCAAGGACAACAGGTACTGAGCCAGCCAAAAATGCATTGTAGAGCTTTTCTGTGATG 894
Query 177087 TAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGAAGATAGTAGCGGG 177146
|| || |||| | ||||| ||||||| ||||| |||||||| | ||||| | | |||
Sbjct 893 TAATCTTTGTGAATTGAGTTTTCAAACGAAAGATAAAATTTACAAGTAGATA-TGGTGGG 835
Query 177147 A-TGAAGTCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTAT 177205
| | | || | ||| | || ||||| | | | ||| || || || || ||
Sbjct 834 AATCAGGTTTTTATCATTCACGTATTCTCCAAACGCTTGCCCATAGGTGTGAATTTCAAT 775
Query 177206 GTGTTTACTGAGCTCTAGGTAGTATCTCGATC-TCACGTGGTCGTTGTTCCAATTGCTGA 177264
|| || ||||| || || || || | | | || || |||||| || || |
Sbjct 774 ACTCTTGCTCAGCTCGTTATAATA-CTTGACCCTGGCATGCTCAGGGTTCCAGTTACTCA 716
Query 177265 CGACCCAGCAAACTAACTTGCTCTTTGCG-GGAACGGGATTCGAT-ACTAATGCAGTGTC 177322
| |||||||| || ||||| |||||||| || || ||| | || || | | |
Sbjct 715 CAACCCAGCACACCAACTT-CTCTTTGCTTGGCAC----TTCAAACACAAAGGGATTTGT 661
Query 177323 TCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGT 177382
|| | ||| | | ||||| ||||| |||||||| || || || | ||| |||| ||
Sbjct 660 GCTCACCGTCAAGAAGCCATAAGGCACTTGAATATCTGAATCACGGCGGTAAGTTAGAGT 601
Query 177383 GAGATTGAAAAGGTTTTCTATACC--TTGTTTGAAGGGGCTGTTACTGGGCGATTCTAAG 177440
|| ||||| | | || || || | |||| ||| ||| | | || || ||||||
Sbjct 600 CAGGTTGAACAAATGCTCGATGCCACTCTTTTG--GGGAGTGTGAGTCGGAGACTCTAAG 543
Query 177441 TTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCT 177500
|||||||| ||||| || ||||||| ||| || | | | ||||| | || ||||
Sbjct 542 TTCATCCAAATCCATTTCTGAAAGGGTGGCCTAGCCTGCTGAGGTAAATTAGTCAGATCC 483
Query 177501 ATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTTTGT 177543
|| || ||||||||||||| | || |||| || |||||
Sbjct 482 CAGCTGATGTCTCTGTGGTGAATCAGGACCGCATGGGATTTGT 440
>seq66404
Length=212649
Score = 122 bits (134), Expect = 1e-22
Identities = 220/322 (68%), Gaps = 0/322 (0%)
Strand=Plus/Plus
Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830
||||||| || || |||| | || || || || || || ||||||||| || | ||
Sbjct 31011 CATAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAATGAAAAGTATTGAAGAGAC 31070
Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890
|||| | ||||| || || |||| || ||||||||||| || | | | || | ||
Sbjct 31071 ACATGTAGCAGCCCTCATCATCCAGTGTTGTGTTCCAAAAGGTGATGCTTGTGTTCCAGA 31130
Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950
|||| || | || ||||||| | ||| | || | ||||||||| ||||| || ||
Sbjct 31131 GTCCCAGCTCAGTGATGTTCATCTTGTCTCTATATGCAGGCTGGACTACAACCCCATGGG 31190
Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010
| |||| | ||| |||||||||| ||||| ||| || |||||||||| || || |
Sbjct 31191 CTTTGCTGTAAGTGACCATGTTTTCTGGGCTTACAGCTTTCTTCTTCTGCCATGTCACAA 31250
Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070
| || ||| | | | | ||||| |||| || || ||||||| || || | |
Sbjct 31251 TCAAGGGTTCCTGGGCCAGCTTCAGAGAACATCGCAAGGATGCAGGTGAGTGCAGCAGCT 31310
Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092
|| || || || || |||||
Sbjct 31311 TTCTCTCATCCTGGGTCACCAC 31332
>seq34769
Length=1374272
Score = 111 bits (122), Expect = 2e-19
Identities = 235/345 (68%), Gaps = 8/345 (2%)
Strand=Plus/Plus
Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702
|||||||| ||||||||||| ||||||||| || || ||| || | | ||||||
Sbjct 613280 ACCATCTCAGCATTGGTCTTAATGGGAAAGTCTGTCCCACAGGTGTTCAGGAGGTATTTC 613339
Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760
|| | | | ||| || | | || || | | |||||||| || ||||| || |
Sbjct 613340 CA--TGGCACAGAGCTCTGGAGCAAGTCTTCCATGCAGTTCAGGTCAGCCTGCACCCTGG 613397
Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820
||| || ||||| || || | ||| | || | || | |||||||| ||| || |
Sbjct 613398 ACCAGGAAGCGTAGACCACTGACACCAGCTTACTAGCTAAGAAGACATTTGGGAAGCATG 613457
Query 162821 AAACTATCCCCATCACGGCCAG--TGAGAACATCGGGTCCGCTTTCCTATCTACGTGTAC 162878
| || || || | || ||| | ||| | || || | ||| ||| || || ||
Sbjct 613458 ACACAATGGCCCTGACTGCCTGCTTGAAAGTCTCTGG--GGACTTCTGATCCACATGGAC 613515
Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938
||||||| |||||||||| ||| | || | ||| | || || || |||| |||||
Sbjct 613516 ACAGTATATGTTCTGAGGGGTGTATACAGCTCGCAGCAGCCTTTCAAAGTTCTCGATCTT 613575
Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983
| ||| ||||| || |||||||| |||||||| |||||||| ||
Sbjct 613576 CTCGTGAACCACCATGGAATACGCAATGGGGAAATCAGCCTCTTC 613620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577568885460800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |