Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq97228 125 2e-23 seq7954 98.7 2e-15 seq117227 86.0 1e-11 >seq97228 Length=228612 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206197 GGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAG 206256 || ||||| ||||| | || || ||| || ||||| | ||| |||||| ||| Sbjct 211593 GGGAAAACCATCACGCTCGAGGTTGAACCCTCGGACACTATAGAAAATGTAAAGGCCAAG 211652 Query 206257 ATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAG 206316 || || || |||||||||||| || || ||||| || |||||||| || |||||| Sbjct 211653 ATCCAGGATAAAGAAGGAATTCCTCCTGATCAGCAAAGGCTGATCTTCGCTGGTAAGCAG 211712 Query 206317 TTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTT 206376 |||||||||| | |||||| | || |||||| | || || ||||| || ||||| ||| Sbjct 211713 CTGGAAGATGGCCGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACCCTTCATCTT 211772 Query 206377 GTTTTGAGACTTCG 206390 || ||||||||||| Sbjct 211773 GTGTTGAGACTTCG 211786 Score = 104 bits (114), Expect = 6e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| ||||| || ||||| || || | || ||||||| |||||| Sbjct 211786 CGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 211727 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||| || |||||||| |||| ||| ||| Sbjct 211726 CGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGA 211682 >seq7954 Length=808569 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| ||||| ||||| || ||||| || || | | ||||||| |||||| | Sbjct 793861 GAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTAC 793802 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||||||||| || |||||||| |||| ||| ||| Sbjct 793801 GGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGA 793758 >seq117227 Length=121535 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 204754 AAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCT 204813 ||||||||| ||||| ||||| || ||||| || || | || ||||||| |||||| | Sbjct 79504 AAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACA 79445 Query 204814 TCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCC 204848 ||||||||||||||||| | || ||||| |||| Sbjct 79444 GCCATCTTCCAGCTGCTTAGCAGCAAAGATCAGCC 79410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180013244603533