Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq97228 125 2e-23
seq7954 98.7 2e-15
seq117227 86.0 1e-11
>seq97228
Length=228612
Score = 125 bits (138), Expect = 2e-23
Identities = 144/194 (74%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 206197 GGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAG 206256
|| ||||| ||||| | || || ||| || ||||| | ||| |||||| |||
Sbjct 211593 GGGAAAACCATCACGCTCGAGGTTGAACCCTCGGACACTATAGAAAATGTAAAGGCCAAG 211652
Query 206257 ATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAG 206316
|| || || |||||||||||| || || ||||| || |||||||| || ||||||
Sbjct 211653 ATCCAGGATAAAGAAGGAATTCCTCCTGATCAGCAAAGGCTGATCTTCGCTGGTAAGCAG 211712
Query 206317 TTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTT 206376
|||||||||| | |||||| | || |||||| | || || ||||| || ||||| |||
Sbjct 211713 CTGGAAGATGGCCGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACCCTTCATCTT 211772
Query 206377 GTTTTGAGACTTCG 206390
|| |||||||||||
Sbjct 211773 GTGTTGAGACTTCG 211786
Score = 104 bits (114), Expect = 6e-17
Identities = 86/105 (82%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||||||| ||||| ||||| || ||||| || || | || ||||||| ||||||
Sbjct 211786 CGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 211727
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
| ||||||||||||||||| || |||||||| |||| ||| |||
Sbjct 211726 CGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGA 211682
>seq7954
Length=808569
Score = 98.7 bits (108), Expect = 2e-15
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812
|||||||||| ||||| ||||| || ||||| || || | | ||||||| |||||| |
Sbjct 793861 GAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTAC 793802
Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
||||||||||||||||| || |||||||| |||| ||| |||
Sbjct 793801 GGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGA 793758
>seq117227
Length=121535
Score = 86.0 bits (94), Expect = 1e-11
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 204754 AAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCT 204813
||||||||| ||||| ||||| || ||||| || || | || ||||||| |||||| |
Sbjct 79504 AAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACA 79445
Query 204814 TCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCC 204848
||||||||||||||||| | || ||||| ||||
Sbjct 79444 GCCATCTTCCAGCTGCTTAGCAGCAAAGATCAGCC 79410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1180013244603533
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |