Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq97228 96.9 3e-15 seq44403 91.5 1e-13 >seq97228 Length=228612 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| || | ||| | | | ||||| ||||||||||||||||| || ||||| ||| Sbjct 211778 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 211719 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| ||||| ||||| | |||| || | || ||||| ||||| || ||||||||||| Sbjct 211718 TTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 211659 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 || || || | | ||| | ||| || | || || || |||| ||| | || Sbjct 211658 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 211599 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || | || || || | |||||||||||| Sbjct 211598 TTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 211566 >seq44403 Length=740699 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| || ||||| | ||||| |||||||||||| ||| ||| | |||||||| ||| Sbjct 626567 TACTCTACTATTTCTGTGCACAAGTTGCTGCATTTGATGGTTCCTAGGTTTTGCTGGTTG 626508 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTT 147624 || |||||||| || | |||||| |||||||||| || ||| ||||| || | | Sbjct 626507 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTGCCTGTCTCTGTCTGAGAT 626448 Query 147625 TCAACGAT 147632 |||| ||| Sbjct 626447 TCAATGAT 626440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475900018640280