Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq97228 96.9 3e-15
seq44403 91.5 1e-13
>seq97228
Length=228612
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970
||| || | ||| | | | ||||| ||||||||||||||||| || ||||| |||
Sbjct 211778 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 211719
Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030
||| ||||| ||||| | |||| || | || ||||| ||||| || |||||||||||
Sbjct 211718 TTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 211659
Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090
|| || || | | ||| | ||| || | || || || |||| ||| | ||
Sbjct 211658 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 211599
Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||| || | || || || | ||||||||||||
Sbjct 211598 TTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 211566
>seq44403
Length=740699
Score = 91.5 bits (100), Expect = 1e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564
|||| || ||||| | ||||| |||||||||||| ||| ||| | |||||||| |||
Sbjct 626567 TACTCTACTATTTCTGTGCACAAGTTGCTGCATTTGATGGTTCCTAGGTTTTGCTGGTTG 626508
Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTT 147624
|| |||||||| || | |||||| |||||||||| || ||| ||||| || | |
Sbjct 626507 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTGCCTGTCTCTGTCTGAGAT 626448
Query 147625 TCAACGAT 147632
|||| |||
Sbjct 626447 TCAATGAT 626440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475900018640280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |