Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq75937 107 6e-20
seq27487 100 9e-18
seq117011 98.7 3e-17
seq96787 98.7 3e-17
seq44413 98.7 3e-17
seq97105 96.9 1e-16
seq117597 84.2 7e-13
>seq75937
Length=326336
Score = 107 bits (118), Expect = 6e-20
Identities = 67/72 (93%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 185125 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 185066
Query 2829 CCGGGCTTCAGC 2840
||||| ||||||
Sbjct 185065 CCGGGTTTCAGC 185054
Score = 107 bits (118), Expect = 6e-20
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 191195 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 191136
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 191135 TCCCGGGTTTCGGC 191122
>seq27487
Length=258643
Score = 100 bits (110), Expect = 9e-18
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 226515 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 226574
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 226575 CCCGGGTTTCGGC 226587
>seq117011
Length=451335
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 203252 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 203193
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 203192 CCGGGTTTCGGC 203181
>seq96787
Length=1439610
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 969489 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 969548
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 969549 CCGGGTTTCGGC 969560
>seq44413
Length=628612
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 516651 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 516710
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 516711 CCGGGTTTCGGC 516722
>seq97105
Length=854028
Score = 96.9 bits (106), Expect = 1e-16
Identities = 59/63 (94%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 2775 GTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGC 2834
||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 501566 GTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGGT 501507
Query 2835 TTC 2837
|||
Sbjct 501506 TTC 501504
>seq117597
Length=56182
Score = 84.2 bits (92), Expect = 7e-13
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832
|| ||||||||||||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct 12169 AAATAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTTGAGGCCGG 12110
Query 2833 GCTTCA 2838
| ||||
Sbjct 12109 GTTTCA 12104
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15828906093585
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |