Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq66404 201 1e-46
seq73029 141 1e-28
seq87169 118 1e-21
seq115445 109 6e-19
seq108307 93.3 5e-14
>seq66404
Length=212649
Score = 201 bits (222), Expect = 1e-46
Identities = 236/319 (74%), Gaps = 0/319 (0%)
Strand=Plus/Minus
Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131
|||||||||||||||||||| ||||||| || | || || ||| || ||| || |||
Sbjct 31332 GTGGTGACCCAGGATGAGAGAAAGCTGCTGCACTCACCTGCATCCTTGCGATGTTCTCTG 31273
Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191
|| | ||||| ||||||| || |||||||| | || | | |||||
Sbjct 31272 AAGCTGGCCCAGGAACCCTTGATTGTGACATGGCAGAAGAAGAAAGCTGTAAGCCCAGAA 31213
Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251
|||||| | |||| ||||||| ||| ||||| || |||||||| || |||| ||||||
Sbjct 31212 AACATGGTCACTTACAGCAAAGCCCATGGGGTTGTAGTCCAGCCTGCATATAGAGACAAG 31153
Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311
|| |||||||| |||| |||||| ||| ||| |||||| |||||||| || || |
Sbjct 31152 ATGAACATCACTGAGCTGGGACTCTGGAACACAAGCATCACCTTTTGGAACACAACACTG 31093
Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371
|| || ||||| ||||||| || ||||| || || ||| |||||||| ||||| ||
Sbjct 31092 GATGATGAGGGCTGCTACATGTGTCTCTTCAATACTTTTCATTCTGGGAAGATCTCAGGA 31033
Query 171372 GTGGCCTGCCTCACCCTCT 171390
||||||||||||||||
Sbjct 31032 ACAGCCTGCCTCACCCTCT 31014
Score = 141 bits (156), Expect = 1e-28
Identities = 183/253 (72%), Gaps = 0/253 (0%)
Strand=Plus/Minus
Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452
|| ||||||| || || || || || || | |||||| |||||||| |||||||| ||
Sbjct 29060 GTACAGCCCATAGTATTCCTTCACTACAACTATTTTGAAGACCACCTAAACATCACATGC 29001
Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512
||||| | ||||||||| | ||| || | |||||| | || ||| ||||||
Sbjct 29000 TCTGCGACTGCCCGCCCAGCCCCTGCCATCTCCTGGAAGGGCACTGGTACAGGAATTGAT 28941
Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572
|| || | ||| || ||| || |||||||| || ||||| ||||| | ||||
Sbjct 28940 AATAGCACTGAGAGTCACGTCCACTCAAATGGAACCACATCTGTCACCAGCATCCTCCGG 28881
Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632
|| ||||||||||||| |||| | || ||||| || |||||||| || | | |||||||
Sbjct 28880 GTCAAAGACCCCAAGAATCAGGTTGGGAAGGAAGTGATCTGCCAGGTTTTGTACCTGGGG 28821
Query 171633 AATGTAACTAACT 171645
| ||| | | |||
Sbjct 28820 ACTGTGATTGACT 28808
>seq73029
Length=1854
Score = 141 bits (156), Expect = 1e-28
Identities = 130/165 (79%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041
||| ||||| || | ||| || | |||||| |||||||| | |||||||| ||||||||
Sbjct 1553 CTTCAGGCCCGTGATGTGTGCAATCATGTANGTGAGCAGGGCATAGCTGGCAATGTTGAA 1494
Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101
||| || ||||||||||| || || ||||||||||| |||||||| || |||||||| |
Sbjct 1493 GGGCACGCCCAGGCCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGCTCCCCATT 1434
Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146
|||| || || || || ||| ||||| || ||||| |||||
Sbjct 1433 CACCACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 1389
>seq87169
Length=633259
Score = 118 bits (130), Expect = 1e-21
Identities = 125/167 (75%), Gaps = 12/167 (7%)
Strand=Plus/Plus
Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290
||||||||||||||||||| ||||| ||||| ||||| ||||||||| ||| || ||||
Sbjct 194971 AGGGTTACTTGGGTTGCCAAGCCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAGTGA 195030
Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350
|||| ||||| || || || ||||| || || ||||||||| | ||||
Sbjct 195031 TGCCCCAGGCAGAAAACCA------------TGGCCCAGAAATCAAGGAGCATTTGAACT 195078
Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397
| ||||| || ||||| |||||||| || | ||||| ||| |||
Sbjct 195079 CCCTGGGAGAGAAGCTGAAGACCCTCAGGAGGCAGCTGCAGCGCTGT 195125
>seq115445
Length=3800
Score = 109 bits (120), Expect = 6e-19
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||||| |||||||| | |||| | || ||||||| |||||| | || || |||||
Sbjct 1150 GTACTCCCTGGTGTTCATCATTGGAGTGATAGGCAATGTTCTGGTGGTTCTGGTGCTCAT 1209
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
|||||| |||||| | | |||||||| ||| | |||||||||||||||| || |||
Sbjct 1210 GCAGTACAGGAGGCTTCGAAGCATGACCAGCATTTACCTGTTCAACCTGGCCATTTCTGA 1269
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767
||| | | ||||||| | || ||||||||| |||
Sbjct 1270 TCTGGTCTTCCTTTTCACTTTGCCTTTTTGGATTGACT 1307
>seq108307
Length=83418
Score = 93.3 bits (102), Expect = 5e-14
Identities = 200/295 (68%), Gaps = 8/295 (3%)
Strand=Plus/Minus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||||| |||||||| | |||| || | ||||| |||| | | |||||||
Sbjct 78650 GTACTCCCTGGTGTTCATCATTGGCCTCCTGGGCAACATGGTGGTTGTGTTGATCCTCAT 78591
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
|||||||| || |||| || ||||| || |||| |||| ||||| |||| || |||
Sbjct 78590 AAAGTACAGGAAGCTCCAAATTATGACTAATATCTACCTGCTCAACTTGGCAATTTCTGA 78531
Query 8730 CCTGCT-GCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTG 8788
|||||| ||| | |||||| | || || |||||||||| | | |||| ||
Sbjct 78530 CCTGCTCTCTG-TCTTCACCGTTCCATTCTGGATTCACT--ATGTTGTATGGAA----TG 78478
Query 8789 GGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGT 8848
|||| | ||||||||||||||| | || || ||| || | || |||
Sbjct 78477 AGTGGTGTTTTGGCCACCACATGTGTAAACTGATCTCTGGGTTTTATTACCTTGCCTTGT 78418
Query 8849 ACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903
|||| || | | || ||||||||| |||| | |||||||| || || ||||
Sbjct 78417 ACAGTGAGATATTTTTCATCATCCTGCTGACAATTGACAGGTACCTGGCCATTGT 78363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582617341087200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |