Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq66404 201 1e-46 seq73029 141 1e-28 seq87169 118 1e-21 seq115445 109 6e-19 seq108307 93.3 5e-14 >seq66404 Length=212649 Score = 201 bits (222), Expect = 1e-46 Identities = 236/319 (74%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||||||||||||||| ||||||| || | || || ||| || ||| || ||| Sbjct 31332 GTGGTGACCCAGGATGAGAGAAAGCTGCTGCACTCACCTGCATCCTTGCGATGTTCTCTG 31273 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | ||||| ||||||| || |||||||| | || | | ||||| Sbjct 31272 AAGCTGGCCCAGGAACCCTTGATTGTGACATGGCAGAAGAAGAAAGCTGTAAGCCCAGAA 31213 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | |||| ||||||| ||| ||||| || |||||||| || |||| |||||| Sbjct 31212 AACATGGTCACTTACAGCAAAGCCCATGGGGTTGTAGTCCAGCCTGCATATAGAGACAAG 31153 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 || |||||||| |||| |||||| ||| ||| |||||| |||||||| || || | Sbjct 31152 ATGAACATCACTGAGCTGGGACTCTGGAACACAAGCATCACCTTTTGGAACACAACACTG 31093 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || ||||| ||||||| || ||||| || || ||| |||||||| ||||| || Sbjct 31092 GATGATGAGGGCTGCTACATGTGTCTCTTCAATACTTTTCATTCTGGGAAGATCTCAGGA 31033 Query 171372 GTGGCCTGCCTCACCCTCT 171390 |||||||||||||||| Sbjct 31032 ACAGCCTGCCTCACCCTCT 31014 Score = 141 bits (156), Expect = 1e-28 Identities = 183/253 (72%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || || || || | |||||| |||||||| |||||||| || Sbjct 29060 GTACAGCCCATAGTATTCCTTCACTACAACTATTTTGAAGACCACCTAAACATCACATGC 29001 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||| | ||||||||| | ||| || | |||||| | || ||| |||||| Sbjct 29000 TCTGCGACTGCCCGCCCAGCCCCTGCCATCTCCTGGAAGGGCACTGGTACAGGAATTGAT 28941 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || || | ||| || ||| || |||||||| || ||||| ||||| | |||| Sbjct 28940 AATAGCACTGAGAGTCACGTCCACTCAAATGGAACCACATCTGTCACCAGCATCCTCCGG 28881 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||||||||||| |||| | || ||||| || |||||||| || | | ||||||| Sbjct 28880 GTCAAAGACCCCAAGAATCAGGTTGGGAAGGAAGTGATCTGCCAGGTTTTGTACCTGGGG 28821 Query 171633 AATGTAACTAACT 171645 | ||| | | ||| Sbjct 28820 ACTGTGATTGACT 28808 >seq73029 Length=1854 Score = 141 bits (156), Expect = 1e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | |||||| |||||||| | |||||||| |||||||| Sbjct 1553 CTTCAGGCCCGTGATGTGTGCAATCATGTANGTGAGCAGGGCATAGCTGGCAATGTTGAA 1494 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || ||||||||||| || || ||||||||||| |||||||| || |||||||| | Sbjct 1493 GGGCACGCCCAGGCCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGCTCCCCATT 1434 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| || || || || ||| ||||| || ||||| ||||| Sbjct 1433 CACCACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 1389 >seq87169 Length=633259 Score = 118 bits (130), Expect = 1e-21 Identities = 125/167 (75%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 ||||||||||||||||||| ||||| ||||| ||||| ||||||||| ||| || |||| Sbjct 194971 AGGGTTACTTGGGTTGCCAAGCCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAGTGA 195030 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| || || || ||||| || || ||||||||| | |||| Sbjct 195031 TGCCCCAGGCAGAAAACCA------------TGGCCCAGAAATCAAGGAGCATTTGAACT 195078 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||| || ||||| |||||||| || | ||||| ||| ||| Sbjct 195079 CCCTGGGAGAGAAGCTGAAGACCCTCAGGAGGCAGCTGCAGCGCTGT 195125 >seq115445 Length=3800 Score = 109 bits (120), Expect = 6e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| | || ||||||| |||||| | || || ||||| Sbjct 1150 GTACTCCCTGGTGTTCATCATTGGAGTGATAGGCAATGTTCTGGTGGTTCTGGTGCTCAT 1209 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||| |||||| | | |||||||| ||| | |||||||||||||||| || ||| Sbjct 1210 GCAGTACAGGAGGCTTCGAAGCATGACCAGCATTTACCTGTTCAACCTGGCCATTTCTGA 1269 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||| | | ||||||| | || ||||||||| ||| Sbjct 1270 TCTGGTCTTCCTTTTCACTTTGCCTTTTTGGATTGACT 1307 >seq108307 Length=83418 Score = 93.3 bits (102), Expect = 5e-14 Identities = 200/295 (68%), Gaps = 8/295 (3%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| || | ||||| |||| | | ||||||| Sbjct 78650 GTACTCCCTGGTGTTCATCATTGGCCTCCTGGGCAACATGGTGGTTGTGTTGATCCTCAT 78591 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||||| || |||| || ||||| || |||| |||| ||||| |||| || ||| Sbjct 78590 AAAGTACAGGAAGCTCCAAATTATGACTAATATCTACCTGCTCAACTTGGCAATTTCTGA 78531 Query 8730 CCTGCT-GCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTG 8788 |||||| ||| | |||||| | || || |||||||||| | | |||| || Sbjct 78530 CCTGCTCTCTG-TCTTCACCGTTCCATTCTGGATTCACT--ATGTTGTATGGAA----TG 78478 Query 8789 GGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGT 8848 |||| | ||||||||||||||| | || || ||| || | || ||| Sbjct 78477 AGTGGTGTTTTGGCCACCACATGTGTAAACTGATCTCTGGGTTTTATTACCTTGCCTTGT 78418 Query 8849 ACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903 |||| || | | || ||||||||| |||| | |||||||| || || |||| Sbjct 78417 ACAGTGAGATATTTTTCATCATCCTGCTGACAATTGACAGGTACCTGGCCATTGT 78363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582617341087200