Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq117061 179 5e-39 seq8896 176 6e-38 seq116971 167 3e-35 seq44436 152 7e-31 seq34771 145 1e-28 seq117011 123 4e-22 >seq117061 Length=280271 Score = 179 bits (198), Expect = 5e-39 Identities = 178/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 174802 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCTTCCAAGGCCATG 174749 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 174748 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCTAGCGAGGCGTCGCGC 174689 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 174688 CTGGCGCATTACAACAAGCGCTCGACCATCACTTCCCGGGAGATCCAGACGGCCGTGCGC 174629 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 174628 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 174580 Score = 104 bits (114), Expect = 3e-16 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| | |||||||||| || ||| | || ||||||||||| |||||| Sbjct 225701 CGCCTGGCGCATTACAACAAGCGCTCGACCATCACTTCCCGGGAGATCCAGACGGCCGTG 225642 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 225641 CGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 225590 Score = 102 bits (112), Expect = 1e-15 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| | |||||||||| || ||| | || ||||||||||| ||||||| Sbjct 209827 GCCTGGCGCATTACAACAAGCGCTCGACCATCACTTCCCGGGAGATCCAGACGGCCGTGC 209886 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 209887 GCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 209937 >seq8896 Length=37314 Score = 176 bits (194), Expect = 6e-38 Identities = 177/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || |||| | || | |||| ||||| Sbjct 26301 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC----GGGCATTTCTTC--CAAGGCCATG 26354 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| |||||| ||| Sbjct 26355 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 26414 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 26415 CTGGCGCATTACAACAAGCGCTCGACCATCACTTCCCGGGAGATCCAGACGGCCGTGCGC 26474 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 26475 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 26523 >seq116971 Length=804141 Score = 167 bits (184), Expect = 3e-35 Identities = 174/227 (77%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| |||| || |||| ||||| Sbjct 324730 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATC-TCGTCCAAGGCCATG 324783 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| || ||||||| ||| Sbjct 324784 GGCATCATGAACTCGTTCGTCAACGACATTTTCGAGCGCATCGCCAGCGAGGCCTCCCGC 324843 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | |||||| | ||||| |||||||| Sbjct 324844 CTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGCGAGGTGCAGACGGCCGTGCGT 324903 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| ||| || ||||||| ||| ||||| ||||||||||| Sbjct 324904 CTGCTGCTGCCCGGGGAGCTGGCCAAGCATGCCGTGTCCGAGGGCAC 324950 Score = 167 bits (184), Expect = 3e-35 Identities = 174/227 (77%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| |||| || |||| ||||| Sbjct 329551 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATC-TCGTCCAAGGCCATG 329498 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| || ||||||| ||| Sbjct 329497 GGCATCATGAACTCGTTCGTCAACGACATTTTCGAGCGCATCGCCAGCGAGGCCTCCCGC 329438 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | |||||| | ||||| |||||||| Sbjct 329437 CTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGCGAGGTGCAGACGGCCGTGCGT 329378 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| ||| || ||||||| ||| ||||| ||||||||||| Sbjct 329377 CTGCTGCTGCCCGGGGAGCTGGCCAAGCATGCCGTGTCCGAGGGCAC 329331 >seq44436 Length=465823 Score = 152 bits (168), Expect = 7e-31 Identities = 172/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| ||||||||||| ||| || || |||| || |||| ||||| Sbjct 193096 TACAAAGTGCTGAAGCAGGTGCATCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 193043 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||||||||| || ||||| |||| ||||||| |||||| ||| Sbjct 193042 GGCATCATGAACTCGTTTGTTAATGACATCTTCGAGCGCATCGCAGGCGAGGCTTCGCGC 192983 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | ||||||||| || ||| |||| ||||||||||| ||||||||| Sbjct 192982 CTGGCGCATTACAACAAGCGTTCTACTATCACGTCGCGGGAGATCCAGACAGCCGTGCGC 192923 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| || |||||||| | ||||||||| || |||||||||| Sbjct 192922 CTGCTGCTGCCGGGGGAACTGGCTAAGCACGCCGTGTCGGAGGGCACCA 192874 Score = 125 bits (138), Expect = 1e-22 Identities = 166/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||| || ||||| |||||||| || || |||| || |||| ||||| Sbjct 139086 TACAAGGTACTGAAGCAAGTGCACCCGGATAC-----GGGCATC-TCGTCCAAGGCCATG 139033 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || ||||| || |||| ||||||| ||||| ||| Sbjct 139032 GGCATCATGAACTCCTTCGTGAACGATATTTTCGAGCGCATCGCAGGGGAGGCTTCCCGC 138973 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 138972 CTGGCGCATTACAACAAGCGCTCGACCATCACTTCACGGGAGATCCAGACAGCCGTGCGC 138913 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || |||| | |||||||| || |||||||||| Sbjct 138912 CTGCTACTGCCCGGGGAGTTGGCTAAACACGCCGTGTCGGAGGGCACCA 138864 >seq34771 Length=1253893 Score = 145 bits (160), Expect = 1e-28 Identities = 173/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||| || ||||| ||||||||||| || || ||| |||| ||| ||| || Sbjct 1092890 ATCTATAAAGTGCTGAAGCAGGTGCATCCGGACAC---TGG--CATC-TCCTCAAAGGCC 1092943 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||| || ||||| | ||||| |||| ||||||| |||||| Sbjct 1092944 ATGAGTATCATGAATTCTTTTGTGACAGACATCTTCGAGCGCATCGCGGGCGAGGCGTCG 1093003 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| | |||||||||| || ||| | || ||||||||||| |||||| Sbjct 1093004 CGCCTGGCGCATTACAACAAGCGCTCNACCATCACTTCCCGGGAGATCCAGACGGCCGTG 1093063 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 1093064 CGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1093115 >seq117011 Length=451335 Score = 123 bits (136), Expect = 4e-22 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 724992 GTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAG 725051 ||||||||||| |||| ||||||| |||||| |||||||||| | ||||||| Sbjct 119129 GTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGCCTGGCGCATTACAACAAG 119188 Query 725052 CGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAA 725111 ||| || ||| | || ||||||||||| |||||||||||| | ||| ||| || Sbjct 119189 CGCTCGACCATCACTTCCCGGGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCCGGGGAG 119248 Query 725112 CTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||||| ||||||||| ||||||||||||| Sbjct 119249 CTGGCCAAGCACGCCGTGTCCGAGGGCACCA 119279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7166297454742426