Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq7954 125 6e-24
seq97228 122 8e-23
seq117227 100 3e-16
>seq7954
Length=808569
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||| | | |||||||| | ||| | || ||||||||||||| |||| || | |
Sbjct 793868 CCACCATGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGAC 793809
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || | || |||||||||||||| || || |||| || ||||| || | ||||
Sbjct 793808 AAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGA 793749
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | ||||| ||| |||||| ||||| | || | | ||||| | ||| |||
Sbjct 793748 ATTCCTTCCTTATCCTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACC 793689
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | |||||| ||||| || || || || |||||||| |||| |||
Sbjct 793688 TCGAGCGTGATGGTTTTCCCTGTAAAGGTCTTCACAAAAATCTCCAT 793642
>seq97228
Length=228612
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | |||||||| | ||| | || |||||||||||||||||| || | |
Sbjct 211792 CCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 211733
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || | || |||||||||||||| || || |||| || ||||| || | ||||
Sbjct 211732 AAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGA 211673
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | || || ||| |||||| ||| | | || | | ||||| | ||| |||
Sbjct 211672 ATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 211613
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | |||||| ||||| ||| | | || ||||| || ||||||||
Sbjct 211612 TCGAGCGTGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 211566
>seq117227
Length=121535
Score = 100 bits (110), Expect = 3e-16
Identities = 152/215 (71%), Gaps = 1/215 (0%)
Strand=Plus/Minus
Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581
|||||||| | ||| | || |||||||||||||||||| || | ||| || | |
Sbjct 79500 CTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAGCCA 79441
Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641
|| |||||||||||| | ||||| |||| || ||||| || | ||||| | |||||
Sbjct 79440 TCTTCCAGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGGAATTCCTTCCTTA 79381
Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701
||| |||||| ||| | | || | | ||||| | ||| |||| | ||||||
Sbjct 79380 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGTGATG 79321
Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||||| || || || || |||| || ||||| ||
Sbjct 79320 GTTTTCCCTGT-AAGGTCCTCACGAAAATCTGAAT 79287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450120942694840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |