Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq97228 107 2e-18
seq117227 93.3 4e-14
seq7954 93.3 4e-14
seq66478 89.7 5e-13
>seq97228
Length=228612
Score = 107 bits (118), Expect = 2e-18
Identities = 159/223 (71%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554
|||| |||||| || || || ||||| |||||||||||||||||||| | ||| || |
Sbjct 211783 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAA-AGTACG 211725
Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614
|| || ||||| || || || || |||| | |||||||| || || || |||||
Sbjct 211724 GCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTC 211665
Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674
||| || || || || || || || | ||||| || | ||| || ||||| ||
Sbjct 211664 TTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGT 211605
Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
|||||||| || | | || || |||||||| ||||| |||
Sbjct 211604 GATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCATCTTG 211562
>seq117227
Length=121535
Score = 93.3 bits (102), Expect = 4e-14
Identities = 156/222 (70%), Gaps = 3/222 (1%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554
|||| |||||| || || || ||||| |||||||||||||||||||| | ||| | |
Sbjct 79503 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAG 79444
Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614
| || || ||||| || | ||||| |||| | ||||| ||| || || || |||||
Sbjct 79443 CCA-TCTTCCAGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGGAATTCCTTC 79385
Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674
|| || || || || || || || | ||||| || | ||| || | ||| ||
Sbjct 79384 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGT 79325
Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716
|||||||| || | ||| || | |||||||| || || ||
Sbjct 79324 GATGGTTTTCCCTG-TAAGGTCCTCACGAAAATCTGAATCTT 79284
>seq7954
Length=808569
Score = 93.3 bits (102), Expect = 4e-14
Identities = 156/223 (70%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554
|||| |||||| || || || ||||| |||||||||||| ||||||| | ||| || |
Sbjct 793859 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAA-AGTACG 793801
Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614
|| || ||||| || || || || |||| | |||||||| || || || |||||
Sbjct 793800 GCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTC 793741
Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674
|| || || || || || | || | ||||| || | ||| || ||||| ||
Sbjct 793740 CTTATCCTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGT 793681
Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
|||||||| || || || || || || ||||| | ||| |||
Sbjct 793680 GATGGTTTTCCCTGTAAAGGTCTTCACAAAAATCTCCATCTTG 793638
>seq66478
Length=146994
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| ||||| || || || || ||||| || ||||| || || || ||||||||||| |
Sbjct 11240 CCACCTCTCAGACGGAAGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 11181
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| || | ||||| ||||| ||||| || | |||||||| || || ||
Sbjct 11180 AGAGTGCAGCCATCTTTCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 11121
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||| | ||||| || || || || ||||| || | ||||| | |||||
Sbjct 11120 ATGTCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 11061
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
|| || || ||||| || ||||| | || || | ||| |||| |||||||
Sbjct 11060 TCNAGGGTGATGGTCTTGCCGGTCAGGGTCTTCATGAAGATTTTCATTTTG 11010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 504644263459960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |