Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq97228 107 2e-18 seq117227 93.3 4e-14 seq7954 93.3 4e-14 seq66478 89.7 5e-13 >seq97228 Length=228612 Score = 107 bits (118), Expect = 2e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || ||||| |||||||||||||||||||| | ||| || | Sbjct 211783 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAA-AGTACG 211725 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||| || || || || |||| | |||||||| || || || ||||| Sbjct 211724 GCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTC 211665 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 ||| || || || || || || || | ||||| || | ||| || ||||| || Sbjct 211664 TTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGT 211605 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 |||||||| || | | || || |||||||| ||||| ||| Sbjct 211604 GATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCATCTTG 211562 >seq117227 Length=121535 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || ||||| |||||||||||||||||||| | ||| | | Sbjct 79503 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAG 79444 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | || || ||||| || | ||||| |||| | ||||| ||| || || || ||||| Sbjct 79443 CCA-TCTTCCAGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGGAATTCCTTC 79385 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || | ||||| || | ||| || | ||| || Sbjct 79384 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGT 79325 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 |||||||| || | ||| || | |||||||| || || || Sbjct 79324 GATGGTTTTCCCTG-TAAGGTCCTCACGAAAATCTGAATCTT 79284 >seq7954 Length=808569 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || ||||| |||||||||||| ||||||| | ||| || | Sbjct 793859 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAA-AGTACG 793801 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||| || || || || |||| | |||||||| || || || ||||| Sbjct 793800 GCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTC 793741 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || | || | ||||| || | ||| || ||||| || Sbjct 793740 CTTATCCTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGT 793681 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 |||||||| || || || || || || ||||| | ||| ||| Sbjct 793680 GATGGTTTTCCCTGTAAAGGTCTTCACAAAAATCTCCATCTTG 793638 >seq66478 Length=146994 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || || || || ||||| || ||||| || || || ||||||||||| | Sbjct 11240 CCACCTCTCAGACGGAAGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 11181 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || | ||||| ||||| ||||| || | |||||||| || || || Sbjct 11180 AGAGTGCAGCCATCTTTCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 11121 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||| | ||||| || || || || ||||| || | ||||| | ||||| Sbjct 11120 ATGTCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 11061 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || ||||| | || || | ||| |||| ||||||| Sbjct 11060 TCNAGGGTGATGGTCTTGCCGGTCAGGGTCTTCATGAAGATTTTCATTTTG 11010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504644263459960