Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq76021 95.1 2e-14 >seq76021 Length=182335 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 214092 TGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGA 214151 |||| | ||| ||||||| | | || || | ||||| | ||| |||||| || Sbjct 108401 TGGGCCAGGAGGTGTTTGGGTTGCTCCCAGGGCTGATGGTCATCTCCACGATCTGGGTGC 108460 Query 214152 GAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAAC 214211 ||||||||||| | || |||||| ||||||| | |||||||| ||| | ||||||| Sbjct 108461 GAGAGCACAACCGCGTGTGCGACTTGCTGAAGGAGGAGCACCCCACCTGGGATGACGAAC 108520 Query 214212 AGCTGTTCCAGATCACTCGTTTAATCATTA 214241 |||| ||||||| ||||||| | ||| ||| Sbjct 108521 AGCTCTTCCAGACCACTCGTCTCATCCTTA 108550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722261457983520