Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq44403 123 3e-23
seq116961 120 4e-22
seq44856 102 1e-16
seq14694 84.2 3e-11
>seq44403
Length=740699
Score = 123 bits (136), Expect = 3e-23
Identities = 107/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|||||||| || || || || || |||||||| || |||||||| || ||||| | |||
Sbjct 631766 TGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATGGAT 631707
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
|||||||| |||||||| ||||||||||| ||||| ||||| || || | | ||||||
Sbjct 631706 TCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAACTG 631647
Query 68839 TTTCTAAGACCAT 68851
||||| | |||||
Sbjct 631646 TTTCTTACACCAT 631634
Score = 120 bits (132), Expect = 4e-22
Identities = 129/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500
|||| |||||||| |||||||| || |||||| ||| | || || || || || || |
Sbjct 634851 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 634792
Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560
| | || || ||||||||||||||||| ||||| || || ||||| || | || | |||
Sbjct 634791 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 634732
Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611
| |||| |||||||| | ||||||| | | ||| || | ||||| ||||
Sbjct 634731 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTTAGGTCATCAGGAA 634681
Score = 107 bits (118), Expect = 3e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
|| || ||||| || | |||||||| |||||||| ||||| || ||||||||||| |||
Sbjct 617605 GTCCCAGCATTGAAGAGAGTAGGAGAGGCGTGAGTAAACCACTTCTCAGAAAGCAGGTTG 617546
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
||||||||||| || | || |||||| | ||||| || | | || | |||||||
Sbjct 617545 TATGTTTCAATCGCAGCATCAATATCCTCTTTGTGAATCCCCACAGATACCCTCATCAAC 617486
Query 70111 ATATGCTGAGGTCGTTC 70127
|||||||| |||| |||
Sbjct 617485 ATATGCTGTGGTCTTTC 617469
Score = 96.9 bits (106), Expect = 5e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 70336 CTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATA 70395
|| || | ||| |||||||| ||||| || || || | || || || ||||||| |||
Sbjct 612569 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGATA 612510
Query 70396 GCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAAT 70455
||||||||||| || | ||||| | || || ||| | || ||||| | ||||| | |
Sbjct 612509 GCATAGTCAGGGTGCTTCGTAGTCAAGGTTGCAGCTGTCTCTGCAGCCAGAGTATCCAGT 612450
Query 70456 TCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501
|| | || || || || |||| || ||||| || ||||||||||
Sbjct 612449 TCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCATGG 612404
Score = 89.7 bits (98), Expect = 7e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006
|| || | ||| ||||||||||| || | || | ||||| ||||| || || || ||
Sbjct 627715 GAGCCCTCATACGTTTCATAAGGGCCATACTCCTTTGCTAGGTCACAGCTAGCTTCCAAA 627656
Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066
|| || |||||||| ||||| || || | |||||| | || |||||| | || ||
Sbjct 627655 GCTCCATAATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGGGCTTCTGGGCTCTCA 627596
Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126
|| || || | || || || |||||||| | || || |||||||| || || ||
Sbjct 627595 AAGGGGTATCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGC 627536
Query 69127 CTATGTCTCTTATTTGA 69143
| ||| | ||||||||
Sbjct 627535 CGATGGCGTTTATTTGA 627519
Score = 86.0 bits (94), Expect = 9e-12
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576
|| ||||| ||||||||||| ||||||| |||||||| |||||||||||||||||||||
Sbjct 624965 TCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACACTCATTTGGACACATCAATGAC 624906
Query 69577 CA 69578
||
Sbjct 624905 CA 624904
>seq116961
Length=993603
Score = 120 bits (132), Expect = 4e-22
Identities = 205/293 (70%), Gaps = 7/293 (2%)
Strand=Plus/Minus
Query 37411 TCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTATTTTA 37470
|| |||||| | || |||| | | || ||||| || || | ||| || | || | || |
Sbjct 255538 TCTGGATAAAAGATCCGTTCAGAAATGAGCTGTGCAATCCGATCACCTTTTTTCACTTCA 255479
Query 37471 AAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTCATCG 37530
|| || ||||||| ||| | ||| | || |||| ||| || ||||||||||||||
Sbjct 255478 AACTTCTCTTTTCCAAAATTAAACAGCACAACACCAACATTTCCTCTATAATCTTCATCT 255419
Query 37531 ATTACTCCGCCTCCTACATCAAT---ACCTTTTAGAGACAAACCCGATCTAGGAGCTATT 37587
|| || || |||||||||| || ||||| | ||| || || | ||||||| |
Sbjct 255418 ATGACACCAGCTCCTACATCTATGAAGGGTTTTACTGCCAAGCCAGAACCTGGAGCTACT 255359
Query 37588 CTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATTGTCTTTCT 37647
|||||||| || || | || ||| |||| |||||||| | ||| || ||||||
Sbjct 255358 CTTCCATAGCATCCAGAAGGAACAGCTATCTGAATGTCTGTTTTCA-CAA-TGGCTTTCT 255301
Query 37648 CCA--GGAAGGATGGTATAATCGTACGCGCTATATAAATCATATCCCGCGGCA 37698
||| || |||| |||||||| || || || || | || || ||||| |||
Sbjct 255300 CCATGGGTGGGATTGTATAATCATAGGCACTGTACAGGTCGTAGCCCGCAGCA 255248
>seq44856
Length=74269
Score = 102 bits (112), Expect = 1e-16
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
||||||| || || || | || || ||||| |||||||||||||| || || | ||| |
Sbjct 50752 CCTCATCCCTGCTGATGAGCTCATTTGAAAAGGTGAGTCCAGGCATGAGGCCTCTCTTCT 50693
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||| ||||| |||||||| || ||||| ||||| | |||||| || || || || |
Sbjct 50692 TCAGCCAGAATATAGCAGCAAACGACCCAGAGAAGAAAACGCCTTCCACAGCAGCGAAGG 50633
Query 39759 CAACAAGTCTCTCTCC 39774
| || | ||| || ||
Sbjct 50632 CCACCACTCTTTCCCC 50617
>seq14694
Length=1798513
Score = 84.2 bits (92), Expect = 3e-11
Identities = 103/139 (74%), Gaps = 5/139 (4%)
Strand=Plus/Plus
Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGT----GACATAACTCCCATTT 39326
||| || ||| |||| || | |||| ||| ||| ||| ||||| || |||||
Sbjct 772101 TTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTCGACATCACCCCCATCC 772159
Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386
| |||||||| || || || ||||| || || || || || ||||| | ||| |||||||
Sbjct 772160 TCTGGTATTCTCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTT 772219
Query 39387 CCATGAAATCAAACGGATT 39405
||||||| ||||| |||||
Sbjct 772220 CCATGAAGTCAAATGGATT 772238
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 685883820447720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |