Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq44403 82.4 6e-11 >seq44403 Length=740699 Score = 82.4 bits (90), Expect = 6e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 131030 GCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTT 131089 || ||||| |||||||||||||||||| |||||||| ||||| ||||| ||||| Sbjct 627679 GCTAGGTCACAGCTAGCTTCCAAAGCTCCATAATAAATAGTTTCAAAGATTTGCTTATTC 627620 Query 131090 AATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGA 131149 ||| | |||| |||||| | || || |||| | || ||||| ||||| ||| Sbjct 627619 AATAACTGGGCTTCTGGGCTCTCAAAGGGGTATCTCATCAGGATGAAAGCATCTGCTAGA 627560 Query 131150 CCCTGTATCCCAA 131162 || |||| ||||| Sbjct 627559 CCTTGTACCCCAA 627547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424316180602776