Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq27438 394 3e-104 seq76224 224 3e-53 seq97228 190 6e-43 seq7954 168 2e-36 seq117227 150 5e-31 seq104799 138 3e-27 seq117087 123 8e-23 seq66478 123 8e-23 seq9545 123 8e-23 seq76410 109 2e-18 seq118086 105 2e-17 seq107319 105 2e-17 seq28181 104 7e-17 seq87143 102 2e-16 seq55092 100 9e-16 seq44705 98.7 3e-15 seq27378 96.9 1e-14 seq66333 95.1 4e-14 seq97156 91.5 4e-13 seq21879 89.7 2e-12 seq17433 89.7 2e-12 seq56319 87.8 5e-12 seq27458 84.2 7e-11 >seq27438 Length=395273 Score = 394 bits (436), Expect = 3e-104 Identities = 975/1467 (66%), Gaps = 33/1467 (2%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || || ||| | || || ||||| || ||||| | ||||| || ||| || || Sbjct 214081 GGCATTGATCTTGGCACCACTTACTCCTGTGTGGGTGTTTTTCAGCATGGAAAGGTGGAG 214140 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 |||||||| ||||| || | ||| |||| || ||| || ||||| ||||| || | Sbjct 214141 ATAATTGCCAATGACCAGGCGAACCGAACCACACCAAGCTATGTTGCTTTTACTGACAAA 214200 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 || | | ||||| ||| | | || ||||| | ||| || || | || || ||| Sbjct 214201 GAATGACTAATTGGGGATACCTCGAAGAATCAGGTTGCAATGAACCCCACCAACACAGTT 214260 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTA 349444 |||||||| || | || ||||| | || ||| ||| | || |||||| | Sbjct 214261 TTTGATGCCAAACATCTGATTGGATGTAGGTTTGATGATTCTGTTGTTCAGTCTGATATG 214320 Query 349445 AAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCA----ATTATTGAGGT 349500 | || | || |||| || || || || | || | ||| | | | || Sbjct 214321 TAGCACTGGCCCTTTATGGTGGTG---AATGATGCAGACAGGCCAGGCCAAGGTCCAAGT 214377 Query 349501 TGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATT-TCATCAATGGTTTTA 349558 || || ||||| || ||||||| ||| ||||| || | | || || ||||| || Sbjct 214378 AGAGTACAAAGGAGAGACAAAAAG--TTTCCACCCGGAGGAGGTGTCCTCTGTGGTTCTA 214435 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 | || ||| |||||||||| ||||| ||| | || | || || || ||||||| | Sbjct 214436 ATAAAGATGGAGGAAATTGCAGAAGCCTATCTTGGGAAGACGGTTACCAATGCTGTGGTC 214495 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 || || |||| | || | |||| | ||| | ||||||||||||||||| | ||| Sbjct 214496 ACAGTGTCAGCTTGCTTCAGTGATTCTCAGTGGCAAGCAACAAAAGATGCTGGAACTATT 214555 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | ||||| || |||| || |||||||| |||||||| || ||||| |||||| Sbjct 214556 GCTGGCCTCAATGTGCTTTGAATTATCAATGAACCAACTGCTGCTGCTATTGCTTATGGG 214615 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 | ||||| | | || |||| ||| | || |||||||| || || ||||||||| Sbjct 214616 TTAGATAAGAAGGTTGGAGCTGAAAGGAATGTGCTGATTTTTGACTTGGGAGGTGGTACT 214675 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 ||| |||| ||| | || || |||| || |||||||||||||| ||| |||| ||||| Sbjct 214676 TTTAATGTGTCAATCCTCACTATTGAGGATGGAATTTTTGAAGTAAAATCAACAGCTGGA 214735 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || || | ||||||||||| |||||||| | | || ||||| || || Sbjct 214736 GACACCCACTTGGGTGGAGAAGACTTTGATAACCCAATAGTCAACCATTTCATTGCTGAG 214795 Query 349919 TTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977 ||||| || |||| || || || | || || ||||| | | | || | Sbjct 214796 TTTAATCG-AAAGCACAAGGAAGACATCAGTGAGAACAAGAGAGCTGTCAGGCATCTGCG 214854 Query 349978 AACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAAT 350037 |||| |||||||| |||||| | || | || |||| ||||| || |||||| || Sbjct 214855 TGCTGCCTGTGAACGGGCTAAGTGCACCCTCTCCTCTAGCACCCAGGCCAGTATTGAGAT 214914 Query 350038 TGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA 350097 ||||||||| ||| || | || |||| | | || ||||| ||||||| |||||||| Sbjct 214915 TGATTCTCTGTATGAGGGAATCGACTTCTATACTTCCATTACCAGTGCTCGATTTGAAGA 214974 Query 350098 ATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGC 350157 |||| | || || || ||| || |||| | ||||||||| | | ||||| Sbjct 214975 ATTAAATGCTGACCTGTTCCGAGGCACTCTGGACCATGTGGAAAAGGCCCTTTGAGATGT 215034 Query 350158 AAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCC 350217 ||| | ||| |||| | | || ||||||||||| | || | Sbjct 215035 CAAACTAGACAAGTCACAGA------------TCCTGGTGGGTGGTTCTACCAGAATCCT 215082 Query 350218 AAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCT-AGATCAATTA 350276 || |||| || | || || || || ||||| ||||||| | ||| | |||| Sbjct 215083 CAAGATTCAGAAGCTTCTGCAAGACTTCTTCAATGGAAAAGAACTGAATAAGAGC-ATTA 215141 Query 350277 ATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATA 350336 | || ||||||||||||| |||||||| ||||| |||||| | ||| |||||||| | | Sbjct 215142 ACCCCAATGAAGCTGTTGCTTATGGTGCAGCTGTCCAGGCAGCCATTCTATCTGGAGACA 215201 Query 350337 AGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAG 350396 || | || ||| | ||| | | || | ||||| ||||| || || ||||| | Sbjct 215202 AGTCTGAGAACATTCAGGATTTGCTGCTCTTGGATGTCACTCCTCTCTCCCTTGGTACTG 215261 Query 350397 AAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAA 350456 || || |||||| ||| |||||||| || || | |||| || | ||||| || Sbjct 215262 AAGCTGCTGGTGGAGTCATGACTGTCCTCATCAGGCGCAATACCACCATCCCTACCAAGC 215321 Query 350457 AGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTG 350516 || | || ||||| | | || | || || |||| | || | ||||| || | || Sbjct 215322 AGACACAGACTTTCACCATATACTCTGACAACTAGCCTGGTGTCTC-ATTCAGGTGTATG 215380 Query 350517 AAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAAA 350576 |||||||| | || || ||||||| || |||||| | ||| ||| | | | Sbjct 215381 AAGGTGAAAGGGCCATGAC-CAAGATAACAACCTGCTTGGAAAGTTTGACCTTACAGGCA 215439 Query 350577 TTCCACCAATGCCTA--GAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAA 350634 | || | ||| | | || |||||||||||||||||| |||| || |||||| |||| Sbjct 215440 TACCTC--TTGCACACCGTGGTGTTCCTCAGATTGAAGTCACTTTTGACATTGATGCAAA 215497 Query 350635 TGGTATTTTAAATGTTACCGCAGTTGA 350661 || || | |||||| | || || || Sbjct 215498 AGGCATCCTCAATGTTTCTGCTGTAGA 215524 >seq76224 Length=91619 Score = 224 bits (248), Expect = 3e-53 Identities = 359/510 (70%), Gaps = 7/510 (1%) Strand=Plus/Minus Query 349499 GTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTT 349556 || || || ||||| || |||||| ||| || || || || | || || |||||| Sbjct 6262 GTAGAGTAAAAAGGAGAGACAAAAG---TTTCTANCCAGAGGAGGTGTCTTCTATGGTTC 6206 Query 349557 TAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTA 349616 | | || |||||||||||||| ||||| ||| | || | | || || ||||||| Sbjct 6205 TGATGAAGATGAAGGAAATTGCAGAAGCCTATCTTGGGAAGATGGTTACCAATGCTGTGG 6146 Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676 | || || ||||| || || ||| | | ||||| |||||||||| |||||| | | Sbjct 6145 TCACAGTGCCAGCTTACTTCAATAAGTCTCAGCGACAGGCAACAAAAGTTGCTGGAACTA 6086 Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736 |||| | ||||| || |||| || |||||||| |||||||| || ||||| |||| Sbjct 6085 TTGCTAACCTCAATGTGCTTCGAATTATCAATGAACCAACTGCTGCTGCTATTGCTTATG 6026 Query 349737 GGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTA 349796 | | ||||| | | || |||| ||| | || |||||||| | || ||||||| Sbjct 6025 TGTTAGATAAGAAGGTTGGAGCTGAAAGGAATGTACTGATTTTTGACTAGGGAGGTGGTA 5966 Query 349797 CTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTG 349856 |||||||||| ||| | || || |||| || |||||||||||||| ||| ||||||||| Sbjct 5965 CTTTTGATGTGTCAATCCTCACTATTGAGGATGGAATTTTTGAAGTCAAATCAACTGCTG 5906 Query 349857 GTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAG 349916 | || || ||| | ||||||||||| ||||| || | | || ||||| || | Sbjct 5905 GAGACACCCATTTGGGTGGAGAAGACTTTGACAACTGAATGGTCAACCATTTCATTGCTG 5846 Query 349917 AATTTAAGCGTCAAGCT-AAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTA 349975 |||||||||| |||| || | || || | || || ||||| | | || || Sbjct 5845 AATTTAAGCG-AAAGCNCAAGAAGGACATCAGTGAGAACAAGAGAGCTGTCAGGCGTCTG 5787 Query 349976 AGAACTGCGTGTGAACGTGCTAAGCGTTCC 350005 | |||| |||||||| ||||||||| || Sbjct 5786 CGTGCTGCCTGTGAACGGGCTAAGCGTACC 5757 >seq97228 Length=228612 Score = 190 bits (210), Expect = 6e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | ||| | ||||||||||| || ||||| |||||||| || || ||||| Sbjct 211793 ACCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 211734 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || |||||||| || || || ||||| ||||| || | ||||||||||||||| Sbjct 211733 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGG 211674 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 |||||||||||||||||| || || || |||||||| || || | || || |||||||| Sbjct 211673 AATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 211614 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || || || | || || || || ||||||||||| Sbjct 211613 CTCGAGCGTGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 211566 >seq7954 Length=808569 Score = 168 bits (186), Expect = 2e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||| | | ||| | ||||||||||| || ||||| |||||||| | || ||||| Sbjct 793869 ACCACCATGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGA 793810 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || |||||||| || || || ||||| ||||| || | ||||||||||||||| Sbjct 793809 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGG 793750 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||||||| |||||||| || || || || | ||| || || | || || |||||||| Sbjct 793749 AATTCCTTCCTTATCCTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAAC 793690 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || || || || | || || |||||||||| ||| Sbjct 793689 CTCGAGCGTGATGGTTTTCCCTGTAAAGGTCTTCACAAAAATCTCCAT 793642 >seq117227 Length=121535 Score = 150 bits (166), Expect = 5e-31 Identities = 171/228 (75%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||| | ||| | ||||||||||| || ||||| |||||||| || || ||||| Sbjct 79513 ACCACCATAAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 79454 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || | |||||||| || || || |||||||||| || | |||| ||||||||| Sbjct 79453 CAAAGTACAGCCATCTTCCAGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGG 79394 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||||||| |||||||| || || || |||||||| || || | || || |||||||| Sbjct 79393 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 79334 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || | || || || || || || | || |||||||| || Sbjct 79333 CTTGAGCGTGATGGTTTTCCCTGTAAG-GTCCTCACGAAAATCTGAAT 79287 >seq104799 Length=2130 Score = 138 bits (152), Expect = 3e-27 Identities = 284/421 (67%), Gaps = 4/421 (1%) Strand=Plus/Minus Query 350240 GAGTTTTTTAATGGCAAAGAACCTTCTAGATCA--ATTAATCCAGATGAAGCTGTTGCAT 350297 || || || ||||| ||||||| | ||| | ||||| || |||||||||||||| | Sbjct 2093 GACTTCTTCAATGGAAAAGAAC--TGAAGAAGAGCATTAACCCTGATGAAGCTGTTGCTT 2036 Query 350298 ATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAGAGTTCTAAAATTGATGATC 350357 ||||||| ||||| |||||| | || | |||| | | ||| | || || | ||| Sbjct 2035 ATGGTGCAGCTGTCCAGGCAGCCATACTGTCTGCAGACAAGTCTGAGAATGTTCAGGATT 1976 Query 350358 TATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGA 350417 | | || | |||| ||||| || || ||||| | ||| || |||||| ||| |||| Sbjct 1975 TGCTGCTCTTGAATGTCACTCCTCTCTCCCTTGGTATTGAAGCTGCTGGTGGAGTCATGA 1916 Query 350418 CTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACAT 350477 || | || || | |||| || | ||||| || || | || || || | || | Sbjct 1915 CTATCCTCATCAAGCGCAATACCACCATCCCTACCAAGCAGACACAGACGTTCACCACCT 1856 Query 350478 TTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTA 350537 | | || || ||||| | || ||||| || | |||||||||| | || |||| Sbjct 1855 ATTCTGACAACCAGCCTGGTGTGCTNATTCAGGTGTATGAAGGTGAAAGGGCCATGACTA 1796 Query 350538 AAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAG 350597 | ||||| || |||||| | ||| || | | || || ||| || || | Sbjct 1795 AGGATAACAACCTGCTTGGAAACTTTGTACTTACAGGCATACCTCCAGCACCCCATGGTG 1736 Query 350598 TTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTATTTTAAATGTTACCGCAG 350657 ||||||||||||||||| |||| || |||||| | ||||| || | |||||| | || | Sbjct 1735 TTCCTCAGATTGAAGTCACTTTTGACATTGATGCCAATGGCATCCTCAATGTTTCTGCTG 1676 Query 350658 T 350658 | Sbjct 1675 T 1675 >seq117087 Length=234790 Score = 123 bits (136), Expect = 8e-23 Identities = 136/180 (76%), Gaps = 1/180 (1%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||| | | ||| | ||| ||||||| |||||||| ||||| | ||||| ||||| Sbjct 123136 ACCACCATGAAGTCTCAACACAGGATGAAGGGTAGACTCCATTTGAGTGTTATAGTCAGA 123077 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || | | |||||| || || | |||||||||| || | | ||||||||||||| Sbjct 123076 CAAAGTGCAAC-ATCTTCCAGCTGCTGGCCAGCAAAGAGCAGCCTTAGCTGATCAGGAGG 123018 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| | | | | ||||||||| || || |||||||| || || | || || |||||||| Sbjct 123017 AATGCGTCCCTCATCCTGAATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAAC 122958 >seq66478 Length=146994 Score = 123 bits (136), Expect = 8e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 140535 TGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGT 140594 || || || |||||||| || || || || ||||| | || | |||||||| || || Sbjct 11444 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCCAGCTGC 11385 Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || ||||||||||| || || ||||| ||||| || || | |||||| |||| || || Sbjct 11384 TTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGGATCTTG 11325 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || || ||||| ||||| | ||| || || ||||| || || | ||||| || || Sbjct 11324 GCCTTGACATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTGATGGTCTTGCCTGTC 11265 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || || || ||||| |||||||| Sbjct 11264 AGGGTCTTCACAAAGATCTGCAT 11242 Score = 109 bits (120), Expect = 2e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 || || || || || |||||||| || || || || ||||| | || | ||||||| Sbjct 11222 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTTC 11163 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648 || || || ||||||||||| || || ||||| ||||| || || | ||||||||||| Sbjct 11162 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTATCCTGG 11103 Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708 || || || || ||||| ||||| | ||| || || || || || || | ||||| Sbjct 11102 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCNAGGGTGATGGTCTTG 11043 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||||| || || || | || || | |||| Sbjct 11042 CCGGTCAGGGTCTTCATGAAGATTTTCATT 11013 >seq9545 Length=18559 Score = 123 bits (136), Expect = 8e-23 Identities = 138/182 (76%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 |||||||| | ||| || ||||||| |||||| ||||| ||||||| || || ||||| Sbjct 10933 ACCACCACAAAGTCTCAGCACAAGAT-AAGAGTGGACTCCCTTTGAATGTTGTAGTCAGA 10991 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || | ||||||||||| || || |||||| ||| | | |||| ||||||||| Sbjct 10992 CAAAGTACAGCCATCTTCAAGCTGCTTACCAGCAG-GATCAACCTCTGCTCATCAGGAGG 11050 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 | | || || ||||||||||| || || |||||||| || || | | || |||||| | Sbjct 11051 AGTCCCGTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATAGTGTGTGAGGGTTCATC 11110 Query 140690 TT 140691 || Sbjct 11111 TT 11112 >seq76410 Length=63831 Score = 109 bits (120), Expect = 2e-18 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 |||||||| | ||| || ||||||| |||||||||||| |||||||| || | ||||| Sbjct 42135 ACCACCACAAAGTCTCAGCACAAGAT-AAGAGTAGACTCCTTTTGAATGTTGCAGTCAGA 42193 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || | ||||||| || || || ||||| | ||| | | |||| |||| |||| Sbjct 42194 CAAAGTACAGTCATCTTCCAGCTGCTTACCAGC-AGGATCAACCTCTGCTCATCAAGAGG 42252 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATC 140668 | | || || ||||||||||| || || |||||||| || Sbjct 42253 AGTCCCCTCCTTATCCTGAATCTTGGCCTTTACATTTTC 42291 >seq118086 Length=30590 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 10/201 (5%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | ||| | |||||||||||| ||||| | |||||| || || ||||| Sbjct 18680 ACCACCACGAAGTTTTAACAGAAGATGAAGAGTGGACTCATATTGAATGTTCTAGTCAGA 18739 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || | |||||||| | || | | ||| || | | ||||| |||| || Sbjct 18740 CAAAGTACAGCCATCTTCCA--------CCTGTGATGATCAGCCTTGGCTGACCAGGGGG 18791 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||||||| |||||||| || || |||||||| || || | || || |||| ||| Sbjct 18792 AATTCCTTCCTTATCCTGGATCTTGTTCTTTACATTTTCTAT--AGTCCGAAGGTTGAAC 18849 Query 140690 TTCAAGTGTAACTGTCTTTCC 140710 |||||| | | || ||||| Sbjct 18850 CTCAAGTATGATAGTTTTTCC 18870 >seq107319 Length=1503807 Score = 105 bits (116), Expect = 2e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 54779 CCACCAACAAATTGTTCAGCTGGAGTAATAGATGATGATATTTTTCATTGGCAAGCAACA 54838 || ||| || | ||||| || || | | | ||||| || |||||||||||||| ||| Sbjct 1201740 CCTCCAGCACAATGTTCTGCAGGTCCAGTTGGAGATGACATGTTTCATTGGCAAGCCACA 1201799 Query 54839 ATTATGGGACCAGAAGATACCCCGTATCAAGGTGGTATATTTGAGTTAAGAATTGATTTT 54898 |||||| |||| | || | ||| |||||||||||| |||| || | |||| ||||| Sbjct 1201800 ATTATGAGACCTAATGACAACCCATATCAAGGTGGTGTATTCTTTTTGANAATTCATTTT 1201859 Query 54899 CCACAAGATTATCCATTTAAACCTCCAAATGTAGTTTTTACTACAAAGATTTATCAT 54955 || ||| || || || ||||| || || || | ||||| | || ||||||||| Sbjct 1201860 CCTACAGACTACCCCTTCAAACCACCTAAGGTTGCATTTACAAAAANAATTTATCAT 1201916 >seq28181 Length=44540 Score = 104 bits (114), Expect = 7e-17 Identities = 153/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 54741 AACGGTTAAATAAGGAGTTAGCTGATATAAATAGTAATCCACCAACAAATTGTTCAGCTG 54800 ||||| | |||||| | |||| |||| | || | || ||| || | ||||| || | Sbjct 27160 AACGGATTAATAAGAATTTAG-TGATTTGGCCCGTGACCCTCCAGCACAATGTTCTGCAG 27218 Query 54801 GAGTAATAGATGATGATATTTTTCATTGGCAAGCAACAATTATGGGACCAGAAGATACCC 54860 | | | | ||||| || ||| |||||||||| |||||||||||||| | || | || Sbjct 27219 GTCCAGTTGGAGATGACATGTTTAATTGGCAAGCCACAATTATGGGACCTAATGACAGCC 27278 Query 54861 CGTATCAAGGTGGTATATTTGAGTTAAGAATTGATTTTCCACAAGATTATCCATTTAAAC 54920 | |||||| ||||| |||| || | |||| ||||||| |||| || || || |||| Sbjct 27279 CATATCAAAGTGGTGTATTCTTTTTGACAATTCATTTTCCTAAAGACTACCCCTTNAAAC 27338 Query 54921 CTCCAAATGTAGTTTTTACTACAAAGATTTATCAT 54955 | || || || ||||| | || ||||||||| Sbjct 27339 CACCTAAGGT--CATTTACAATAAGAATTTATCAT 27371 >seq87143 Length=1077445 Score = 102 bits (112), Expect = 2e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 ||||||| | || || ||||| || || |||||| | ||||| ||||||||||||| Sbjct 611620 ATGCTGTGGTCACAGTGCCAGCTTACTTCAATGATTCTCAGCGACAGGCAACAAAAGATG 611679 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | ||||| || | ||||| || |||| || ||||| || |||||||| || | Sbjct 611680 CTGGAACTATTGCTGGCCTCAATGTGCTTCGAATTATCAATGAGCCAACTGCTGCTGCTA 611739 Query 349728 TTGCATATGGGCTTGATAA 349746 |||| |||||| | ||||| Sbjct 611740 TTGCTTATGGGTTAGATAA 611758 Score = 86.0 bits (94), Expect = 2e-11 Identities = 155/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 350082 GTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAA 350141 ||||||| |||||||||||| | || || || |||| || |||| ||||| |||| Sbjct 612200 GTGCTCGATTTGAAGAATTAAATGCTGACCTGTTCAGAGGCACTCTGGACCCTGTAGAAA 612259 Query 350142 AAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTG 350201 | | | |||||| ||| | ||| ||||| |||| | || | || |||| Sbjct 612260 AGGCCCTTCGAGATGCCAAACTAGACAAGTCACAGATCCATGACATTGTCCTGGTGGGTG 612319 Query 350202 GTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC 350261 ||||||| | || || || |||| || | || || || || ||||| ||||||| Sbjct 612320 GTTCTACCAGAATCCCCAAGATTCAGAAGCTTCTGCAGGACTTCTTCAATGGAAAAGAAC 612379 Query 350262 CTTCT-AGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304 | ||| | ||||| || |||||||||||||| |||||||| Sbjct 612380 TGAATAAGAGC-ATTAACCCCGATGAAGCTGTTGCTTATGGTGC 612422 >seq55092 Length=657151 Score = 100 bits (110), Expect = 9e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 ||||||||| | ||| | |||||||| ||||| || |||||||| |||| ||||| | Sbjct 237828 ATTGATGAAATTGTTCTTGTTGGTGGGTCTACTCGAATTCCAAAGATTCAGCAGTTGGTG 237887 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 ||||| || |||||||| || || || | || || || ||||| ||||| || Sbjct 237888 AAAGAGTTCTTCAATGGCAAGGAGCCATCCCGTGGCATAAACCCCGATGAGGCTGTAGCG 237947 Query 350297 TATGGTGCTGCTGTTCAGGC 350316 |||||||||||||| ||||| Sbjct 237948 TATGGTGCTGCTGTCCAGGC 237967 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| ||| ||||||||||||| || || |||||||||||||| ||||| ||||||| Sbjct 237027 ATGCAGTTGTTACTGTACCAGCTTACTTCAATGATGCCCAGCGGCAAGCAACCAAAGATG 237086 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 |||||| |||||| || | ||||| | || || || ||||| || Sbjct 237087 CTGGCACCATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 237132 >seq44705 Length=104105 Score = 98.7 bits (108), Expect = 3e-15 Identities = 153/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 |||||||| | ||||| ||||||||||| || || || ||| |||| || || ||||| Sbjct 16999 ACCACCACAAAGTCTTAACACAAGATGAAG-GTGGAATCCTTT-GAATGTTGTAGTCAGA 16942 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | | | |||| ||||| || ||||||||||| || ||| |||| |||| | Sbjct 16941 CAGAGCACATTACTCTTGGAGTTGCTTACCAGCAAAGATCAGCTTTTGTTGATTAGGAAG 16882 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||| ||| |||||||| | ||| || |||| | || |||| || || |||||| | Sbjct 16881 AATTCTTTC-TTATCCTGGACTTTGGCCTTTATGGTTTCCATCGTGTCTGACGGTTCAGC 16823 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTA 140724 | ||||| | | ||| || || || || |||| Sbjct 16822 CTTGAGTGTGATGGCCTTCCCCGTAAGGGTCTTTA 16788 >seq27378 Length=944821 Score = 96.9 bits (106), Expect = 1e-14 Identities = 128/177 (72%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 54779 CCACCAACAAATTGTTCAGCTGGAGTAATAGATGATGATATTTTTCATTGGCAAGCAACA 54838 || ||| || | ||||| || || | | | ||||| || |||||||||||||| ||| Sbjct 56083 CCTCCAGCACAATGTTCTGCAGGTCCAGTTGGAGATGACATGTTTCATTGGCAAGCCACA 56142 Query 54839 ATTATGGGACCAGAAGATACCCCGTATCAAGGTGGTATATTTGAGTTAAGAATTGATTTT 54898 ||||||||||| | || | |||||||||||||||| ||| | | |||| ||||| Sbjct 56143 ATTATGGGACCTAATGACAGCCCGTATCAAGGTGGTGAATTCTTTCTGACAATTCATTTT 56202 Query 54899 CCACAAGATTATCCATTTAAACCTCCAAATGTAGTTTTTACTACAAAGATTTATCAT 54955 || ||| || || || ||||| || || || | || ||||| ||||||||| Sbjct 56203 CCTACAGACTACCCCTTCAAACCACCTAAGGTTGCATT---TACAAGAATTTATCAT 56256 >seq66333 Length=364213 Score = 95.1 bits (104), Expect = 4e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 378237 ACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATG 378296 |||||| | | ||| ||||| || || || || | ||| | || || ||||| ||||| Sbjct 184968 ACCAGTCTCAGCAGTCTTAACAGCTGTGTCGATAAGACCCTCTCGTCCTCCCATGGCATG 185027 Query 378297 GAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGC 378356 |||||| || ||||| || ||||| ||| | | |||| |||| | ||| ||||| Sbjct 185028 GAAGAAGAACTCAGTGGGTGTAAGACCAGCTAAGTATGAGTTCTCTACAAAGCCTCTNCT 185087 Query 378357 GCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGG 378416 | || || ||||| || || | ||||| | || |||| || ||| ||| |||| Sbjct 185088 CTCAGGACCATAATCATCCTTGATAAAGTGAGGAAGAGTCCGATGCTTAAATCCAAATGG 185147 Query 378417 AATTCGTTTTCCATCAACATTCTGTTGACCAA 378448 || ||||| || || || ||||| || |||| Sbjct 185148 GATCCGTTTGCCCTCCACGTTCTGCTGCCCAA 185179 >seq97156 Length=413001 Score = 91.5 bits (100), Expect = 4e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||| |||| | | ||| | |||||||||||| | ||||||||||||| || || || Sbjct 395497 CATATCACCTCAAAGTCTCAACACAAGATGAAGAATGGACTCTTTTTGAACGTTGTAGTC 395438 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| || | | || ||||| || || || || | |||||| | | || || || | Sbjct 395437 AGACAA-ATATGTCCGTCTTCCAGCTGCTTACCCAC-AAGATTGGCCTCTGTTGGCCAAG 395380 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||||||||| | |||||| || || || ||||||| | | || || ||| Sbjct 395379 AGGAATTCCTTCCTCATCCTGGATCTTGCCTCTTACATTTTATGTGATATATGAGGGTCT 395320 Query 140687 AACTTCAAGTGTAA 140700 |||||| ||||||| Sbjct 395319 AACTTCTAGTGTAA 395306 >seq21879 Length=1267 Score = 89.7 bits (98), Expect = 2e-12 Identities = 99/131 (76%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||| | | ||| | ||||||||||| || ||||| |||||||| | | ||||| Sbjct 678 ACCACCAGGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGGAGTCAGA 737 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || | | |||||| || || | ||||| ||||| || | |||||||||||||| Sbjct 738 CAAATTACAGA-ATCTTCCAGATGCTCACCAGCCAAGATCAGTCTGTGCTGATCAGGAGG 796 Query 140630 AATTCCTTCTT 140640 ||||||||||| Sbjct 797 AATTCCTTCTT 807 >seq17433 Length=217209 Score = 89.7 bits (98), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 |||||||| || || ||||| || || || |||||||| || || || ||||| ||||| Sbjct 167045 TTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATC 166986 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCT 140636 || | |||||||||||||||||||||| Sbjct 166985 AGCCTTTGCTGATCAGGAGGAATTCCT 166959 >seq56319 Length=26720 Score = 87.8 bits (96), Expect = 5e-12 Identities = 157/228 (69%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||| | | ||| | ||| ||||| || |||| | ||||| || || ||||| Sbjct 26536 ACCACCATGAAGTCTCACCACAGAATGAAAGGTGGACTTTCACTGAATGTTGTAGTCAGA 26477 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || | || | | |||| | || || |||||||| | ||||||||||| ||| Sbjct 26476 CAAAATACGGCATTTTTCA-GCTGCTTATCAGCAAAGCCT-----TTGCTGATCAGAAGG 26423 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 |||||| | | | |||| || || ||||||||| || || | ||| || |||| ||| Sbjct 26422 AATTCCAGCCTCAACCTGGATCTTGTTTTTTACATTTTCTATAGCATCTGAAGGTTTAAC 26363 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || | | || |||| ||||||| ||| Sbjct 26362 CTCAAGAGTGATGGTCTTCCCCATAAAGGTCTTTATGAAAATCTCCAT 26315 >seq27458 Length=327334 Score = 84.2 bits (92), Expect = 7e-11 Identities = 115/157 (73%), Gaps = 8/157 (5%) Strand=Plus/Minus Query 350275 TAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAA 350334 ||| || |||||||||||||| |||||||| |||| |||| | ||| |||||||| | Sbjct 88000 TAAGCCTGATGAAGCTGTTGCTTATGGTGCAGCTGCCCAGGTGGCCATTCTATCTGGAGA 87941 Query 350335 TAAGAGTTCTAAAATTGAT---GATCTATTACTACTAGATGTAACTCCACTTTCGCTTGG 350391 ||| ||| | | || | ||| | | || | |||| || | ||||| ||||| Sbjct 87940 CAAG---TCTGAGAATGTTCGGGATTTGCTGCTCTTGAATGTCACCCGTCTTTCCCTTGG 87884 Query 350392 -ATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTAT 350427 |||| |||||||||||| ||| |||||||| || || Sbjct 87883 TATTA-AAACTTCTGGTGGAGTCATGACTGTCCTCAT 87848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1512936869061519