Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq27438 394 3e-104
seq76224 224 3e-53
seq97228 190 6e-43
seq7954 168 2e-36
seq117227 150 5e-31
seq104799 138 3e-27
seq117087 123 8e-23
seq66478 123 8e-23
seq9545 123 8e-23
seq76410 109 2e-18
seq118086 105 2e-17
seq107319 105 2e-17
seq28181 104 7e-17
seq87143 102 2e-16
seq55092 100 9e-16
seq44705 98.7 3e-15
seq27378 96.9 1e-14
seq66333 95.1 4e-14
seq97156 91.5 4e-13
seq21879 89.7 2e-12
seq17433 89.7 2e-12
seq56319 87.8 5e-12
seq27458 84.2 7e-11
>seq27438
Length=395273
Score = 394 bits (436), Expect = 3e-104
Identities = 975/1467 (66%), Gaps = 33/1467 (2%)
Strand=Plus/Plus
Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264
|| || ||| | || || ||||| || ||||| | ||||| || ||| || ||
Sbjct 214081 GGCATTGATCTTGGCACCACTTACTCCTGTGTGGGTGTTTTTCAGCATGGAAAGGTGGAG 214140
Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324
|||||||| ||||| || | ||| |||| || ||| || ||||| ||||| || |
Sbjct 214141 ATAATTGCCAATGACCAGGCGAACCGAACCACACCAAGCTATGTTGCTTTTACTGACAAA 214200
Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384
|| | | ||||| ||| | | || ||||| | ||| || || | || || |||
Sbjct 214201 GAATGACTAATTGGGGATACCTCGAAGAATCAGGTTGCAATGAACCCCACCAACACAGTT 214260
Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTA 349444
|||||||| || | || ||||| | || ||| ||| | || |||||| |
Sbjct 214261 TTTGATGCCAAACATCTGATTGGATGTAGGTTTGATGATTCTGTTGTTCAGTCTGATATG 214320
Query 349445 AAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCA----ATTATTGAGGT 349500
| || | || |||| || || || || | || | ||| | | | ||
Sbjct 214321 TAGCACTGGCCCTTTATGGTGGTG---AATGATGCAGACAGGCCAGGCCAAGGTCCAAGT 214377
Query 349501 TGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATT-TCATCAATGGTTTTA 349558
|| || ||||| || ||||||| ||| ||||| || | | || || ||||| ||
Sbjct 214378 AGAGTACAAAGGAGAGACAAAAAG--TTTCCACCCGGAGGAGGTGTCCTCTGTGGTTCTA 214435
Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618
| || ||| |||||||||| ||||| ||| | || | || || || ||||||| |
Sbjct 214436 ATAAAGATGGAGGAAATTGCAGAAGCCTATCTTGGGAAGACGGTTACCAATGCTGTGGTC 214495
Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678
|| || |||| | || | |||| | ||| | ||||||||||||||||| | |||
Sbjct 214496 ACAGTGTCAGCTTGCTTCAGTGATTCTCAGTGGCAAGCAACAAAAGATGCTGGAACTATT 214555
Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738
|| || | ||||| || |||| || |||||||| |||||||| || ||||| ||||||
Sbjct 214556 GCTGGCCTCAATGTGCTTTGAATTATCAATGAACCAACTGCTGCTGCTATTGCTTATGGG 214615
Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798
| ||||| | | || |||| ||| | || |||||||| || || |||||||||
Sbjct 214616 TTAGATAAGAAGGTTGGAGCTGAAAGGAATGTGCTGATTTTTGACTTGGGAGGTGGTACT 214675
Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858
||| |||| ||| | || || |||| || |||||||||||||| ||| |||| |||||
Sbjct 214676 TTTAATGTGTCAATCCTCACTATTGAGGATGGAATTTTTGAAGTAAAATCAACAGCTGGA 214735
Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918
|| || || | ||||||||||| |||||||| | | || ||||| || ||
Sbjct 214736 GACACCCACTTGGGTGGAGAAGACTTTGATAACCCAATAGTCAACCATTTCATTGCTGAG 214795
Query 349919 TTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977
||||| || |||| || || || | || || ||||| | | | || |
Sbjct 214796 TTTAATCG-AAAGCACAAGGAAGACATCAGTGAGAACAAGAGAGCTGTCAGGCATCTGCG 214854
Query 349978 AACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAAT 350037
|||| |||||||| |||||| | || | || |||| ||||| || |||||| ||
Sbjct 214855 TGCTGCCTGTGAACGGGCTAAGTGCACCCTCTCCTCTAGCACCCAGGCCAGTATTGAGAT 214914
Query 350038 TGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA 350097
||||||||| ||| || | || |||| | | || ||||| ||||||| ||||||||
Sbjct 214915 TGATTCTCTGTATGAGGGAATCGACTTCTATACTTCCATTACCAGTGCTCGATTTGAAGA 214974
Query 350098 ATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGC 350157
|||| | || || || ||| || |||| | ||||||||| | | |||||
Sbjct 214975 ATTAAATGCTGACCTGTTCCGAGGCACTCTGGACCATGTGGAAAAGGCCCTTTGAGATGT 215034
Query 350158 AAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCC 350217
||| | ||| |||| | | || ||||||||||| | || |
Sbjct 215035 CAAACTAGACAAGTCACAGA------------TCCTGGTGGGTGGTTCTACCAGAATCCT 215082
Query 350218 AAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCT-AGATCAATTA 350276
|| |||| || | || || || || ||||| ||||||| | ||| | ||||
Sbjct 215083 CAAGATTCAGAAGCTTCTGCAAGACTTCTTCAATGGAAAAGAACTGAATAAGAGC-ATTA 215141
Query 350277 ATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATA 350336
| || ||||||||||||| |||||||| ||||| |||||| | ||| |||||||| | |
Sbjct 215142 ACCCCAATGAAGCTGTTGCTTATGGTGCAGCTGTCCAGGCAGCCATTCTATCTGGAGACA 215201
Query 350337 AGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAG 350396
|| | || ||| | ||| | | || | ||||| ||||| || || ||||| |
Sbjct 215202 AGTCTGAGAACATTCAGGATTTGCTGCTCTTGGATGTCACTCCTCTCTCCCTTGGTACTG 215261
Query 350397 AAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAA 350456
|| || |||||| ||| |||||||| || || | |||| || | ||||| ||
Sbjct 215262 AAGCTGCTGGTGGAGTCATGACTGTCCTCATCAGGCGCAATACCACCATCCCTACCAAGC 215321
Query 350457 AGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTG 350516
|| | || ||||| | | || | || || |||| | || | ||||| || | ||
Sbjct 215322 AGACACAGACTTTCACCATATACTCTGACAACTAGCCTGGTGTCTC-ATTCAGGTGTATG 215380
Query 350517 AAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAAA 350576
|||||||| | || || ||||||| || |||||| | ||| ||| | | |
Sbjct 215381 AAGGTGAAAGGGCCATGAC-CAAGATAACAACCTGCTTGGAAAGTTTGACCTTACAGGCA 215439
Query 350577 TTCCACCAATGCCTA--GAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAA 350634
| || | ||| | | || |||||||||||||||||| |||| || |||||| ||||
Sbjct 215440 TACCTC--TTGCACACCGTGGTGTTCCTCAGATTGAAGTCACTTTTGACATTGATGCAAA 215497
Query 350635 TGGTATTTTAAATGTTACCGCAGTTGA 350661
|| || | |||||| | || || ||
Sbjct 215498 AGGCATCCTCAATGTTTCTGCTGTAGA 215524
>seq76224
Length=91619
Score = 224 bits (248), Expect = 3e-53
Identities = 359/510 (70%), Gaps = 7/510 (1%)
Strand=Plus/Minus
Query 349499 GTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTT 349556
|| || || ||||| || |||||| ||| || || || || | || || ||||||
Sbjct 6262 GTAGAGTAAAAAGGAGAGACAAAAG---TTTCTANCCAGAGGAGGTGTCTTCTATGGTTC 6206
Query 349557 TAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTA 349616
| | || |||||||||||||| ||||| ||| | || | | || || |||||||
Sbjct 6205 TGATGAAGATGAAGGAAATTGCAGAAGCCTATCTTGGGAAGATGGTTACCAATGCTGTGG 6146
Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676
| || || ||||| || || ||| | | ||||| |||||||||| |||||| | |
Sbjct 6145 TCACAGTGCCAGCTTACTTCAATAAGTCTCAGCGACAGGCAACAAAAGTTGCTGGAACTA 6086
Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736
|||| | ||||| || |||| || |||||||| |||||||| || ||||| ||||
Sbjct 6085 TTGCTAACCTCAATGTGCTTCGAATTATCAATGAACCAACTGCTGCTGCTATTGCTTATG 6026
Query 349737 GGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTA 349796
| | ||||| | | || |||| ||| | || |||||||| | || |||||||
Sbjct 6025 TGTTAGATAAGAAGGTTGGAGCTGAAAGGAATGTACTGATTTTTGACTAGGGAGGTGGTA 5966
Query 349797 CTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTG 349856
|||||||||| ||| | || || |||| || |||||||||||||| ||| |||||||||
Sbjct 5965 CTTTTGATGTGTCAATCCTCACTATTGAGGATGGAATTTTTGAAGTCAAATCAACTGCTG 5906
Query 349857 GTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAG 349916
| || || ||| | ||||||||||| ||||| || | | || ||||| || |
Sbjct 5905 GAGACACCCATTTGGGTGGAGAAGACTTTGACAACTGAATGGTCAACCATTTCATTGCTG 5846
Query 349917 AATTTAAGCGTCAAGCT-AAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTA 349975
|||||||||| |||| || | || || | || || ||||| | | || ||
Sbjct 5845 AATTTAAGCG-AAAGCNCAAGAAGGACATCAGTGAGAACAAGAGAGCTGTCAGGCGTCTG 5787
Query 349976 AGAACTGCGTGTGAACGTGCTAAGCGTTCC 350005
| |||| |||||||| ||||||||| ||
Sbjct 5786 CGTGCTGCCTGTGAACGGGCTAAGCGTACC 5757
>seq97228
Length=228612
Score = 190 bits (210), Expect = 6e-43
Identities = 179/228 (79%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||||| | ||| | ||||||||||| || ||||| |||||||| || || |||||
Sbjct 211793 ACCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 211734
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
|| || || |||||||| || || || ||||| ||||| || | |||||||||||||||
Sbjct 211733 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGG 211674
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
|||||||||||||||||| || || || |||||||| || || | || || ||||||||
Sbjct 211673 AATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 211614
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || | || || || | || || || || |||||||||||
Sbjct 211613 CTCGAGCGTGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 211566
>seq7954
Length=808569
Score = 168 bits (186), Expect = 2e-36
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||| | | ||| | ||||||||||| || ||||| |||||||| | || |||||
Sbjct 793869 ACCACCATGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGA 793810
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
|| || || |||||||| || || || ||||| ||||| || | |||||||||||||||
Sbjct 793809 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGG 793750
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
||||||||| |||||||| || || || || | ||| || || | || || ||||||||
Sbjct 793749 AATTCCTTCCTTATCCTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAAC 793690
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || | || || || || | || || |||||||||| |||
Sbjct 793689 CTCGAGCGTGATGGTTTTCCCTGTAAAGGTCTTCACAAAAATCTCCAT 793642
>seq117227
Length=121535
Score = 150 bits (166), Expect = 5e-31
Identities = 171/228 (75%), Gaps = 1/228 (0%)
Strand=Plus/Minus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||| | ||| | ||||||||||| || ||||| |||||||| || || |||||
Sbjct 79513 ACCACCATAAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 79454
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
|| || | |||||||| || || || |||||||||| || | |||| |||||||||
Sbjct 79453 CAAAGTACAGCCATCTTCCAGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGG 79394
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
||||||||| |||||||| || || || |||||||| || || | || || ||||||||
Sbjct 79393 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 79334
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || || | || || || || || || | || |||||||| ||
Sbjct 79333 CTTGAGCGTGATGGTTTTCCCTGTAAG-GTCCTCACGAAAATCTGAAT 79287
>seq104799
Length=2130
Score = 138 bits (152), Expect = 3e-27
Identities = 284/421 (67%), Gaps = 4/421 (1%)
Strand=Plus/Minus
Query 350240 GAGTTTTTTAATGGCAAAGAACCTTCTAGATCA--ATTAATCCAGATGAAGCTGTTGCAT 350297
|| || || ||||| ||||||| | ||| | ||||| || |||||||||||||| |
Sbjct 2093 GACTTCTTCAATGGAAAAGAAC--TGAAGAAGAGCATTAACCCTGATGAAGCTGTTGCTT 2036
Query 350298 ATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAGAGTTCTAAAATTGATGATC 350357
||||||| ||||| |||||| | || | |||| | | ||| | || || | |||
Sbjct 2035 ATGGTGCAGCTGTCCAGGCAGCCATACTGTCTGCAGACAAGTCTGAGAATGTTCAGGATT 1976
Query 350358 TATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGA 350417
| | || | |||| ||||| || || ||||| | ||| || |||||| ||| ||||
Sbjct 1975 TGCTGCTCTTGAATGTCACTCCTCTCTCCCTTGGTATTGAAGCTGCTGGTGGAGTCATGA 1916
Query 350418 CTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACAT 350477
|| | || || | |||| || | ||||| || || | || || || | || |
Sbjct 1915 CTATCCTCATCAAGCGCAATACCACCATCCCTACCAAGCAGACACAGACGTTCACCACCT 1856
Query 350478 TTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTA 350537
| | || || ||||| | || ||||| || | |||||||||| | || ||||
Sbjct 1855 ATTCTGACAACCAGCCTGGTGTGCTNATTCAGGTGTATGAAGGTGAAAGGGCCATGACTA 1796
Query 350538 AAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAG 350597
| ||||| || |||||| | ||| || | | || || ||| || || |
Sbjct 1795 AGGATAACAACCTGCTTGGAAACTTTGTACTTACAGGCATACCTCCAGCACCCCATGGTG 1736
Query 350598 TTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTATTTTAAATGTTACCGCAG 350657
||||||||||||||||| |||| || |||||| | ||||| || | |||||| | || |
Sbjct 1735 TTCCTCAGATTGAAGTCACTTTTGACATTGATGCCAATGGCATCCTCAATGTTTCTGCTG 1676
Query 350658 T 350658
|
Sbjct 1675 T 1675
>seq117087
Length=234790
Score = 123 bits (136), Expect = 8e-23
Identities = 136/180 (76%), Gaps = 1/180 (1%)
Strand=Plus/Minus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||| | | ||| | ||| ||||||| |||||||| ||||| | ||||| |||||
Sbjct 123136 ACCACCATGAAGTCTCAACACAGGATGAAGGGTAGACTCCATTTGAGTGTTATAGTCAGA 123077
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
|| || | | |||||| || || | |||||||||| || | | |||||||||||||
Sbjct 123076 CAAAGTGCAAC-ATCTTCCAGCTGCTGGCCAGCAAAGAGCAGCCTTAGCTGATCAGGAGG 123018
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
||| | | | | ||||||||| || || |||||||| || || | || || ||||||||
Sbjct 123017 AATGCGTCCCTCATCCTGAATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAAC 122958
>seq66478
Length=146994
Score = 123 bits (136), Expect = 8e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 140535 TGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGT 140594
|| || || |||||||| || || || || ||||| | || | |||||||| || ||
Sbjct 11444 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCCAGCTGC 11385
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| ||||||||||| || || ||||| ||||| || || | |||||| |||| || ||
Sbjct 11384 TTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGGATCTTG 11325
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
|| || ||||| ||||| | ||| || || ||||| || || | ||||| || ||
Sbjct 11324 GCCTTGACATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTGATGGTCTTGCCTGTC 11265
Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737
|| || || ||||| ||||||||
Sbjct 11264 AGGGTCTTCACAAAGATCTGCAT 11242
Score = 109 bits (120), Expect = 2e-18
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588
|| || || || || |||||||| || || || || ||||| | || | |||||||
Sbjct 11222 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTTC 11163
Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648
|| || || ||||||||||| || || ||||| ||||| || || | |||||||||||
Sbjct 11162 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTATCCTGG 11103
Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708
|| || || || ||||| ||||| | ||| || || || || || || | |||||
Sbjct 11102 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCNAGGGTGATGGTCTTG 11043
Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCATT 140738
||||| || || || | || || | ||||
Sbjct 11042 CCGGTCAGGGTCTTCATGAAGATTTTCATT 11013
>seq9545
Length=18559
Score = 123 bits (136), Expect = 8e-23
Identities = 138/182 (76%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
|||||||| | ||| || ||||||| |||||| ||||| ||||||| || || |||||
Sbjct 10933 ACCACCACAAAGTCTCAGCACAAGAT-AAGAGTGGACTCCCTTTGAATGTTGTAGTCAGA 10991
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
|| || | ||||||||||| || || |||||| ||| | | |||| |||||||||
Sbjct 10992 CAAAGTACAGCCATCTTCAAGCTGCTTACCAGCAG-GATCAACCTCTGCTCATCAGGAGG 11050
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
| | || || ||||||||||| || || |||||||| || || | | || |||||| |
Sbjct 11051 AGTCCCGTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATAGTGTGTGAGGGTTCATC 11110
Query 140690 TT 140691
||
Sbjct 11111 TT 11112
>seq76410
Length=63831
Score = 109 bits (120), Expect = 2e-18
Identities = 121/159 (76%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
|||||||| | ||| || ||||||| |||||||||||| |||||||| || | |||||
Sbjct 42135 ACCACCACAAAGTCTCAGCACAAGAT-AAGAGTAGACTCCTTTTGAATGTTGCAGTCAGA 42193
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
|| || | ||||||| || || || ||||| | ||| | | |||| |||| ||||
Sbjct 42194 CAAAGTACAGTCATCTTCCAGCTGCTTACCAGC-AGGATCAACCTCTGCTCATCAAGAGG 42252
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATC 140668
| | || || ||||||||||| || || |||||||| ||
Sbjct 42253 AGTCCCCTCCTTATCCTGAATCTTGGCCTTTACATTTTC 42291
>seq118086
Length=30590
Score = 105 bits (116), Expect = 2e-17
Identities = 144/201 (72%), Gaps = 10/201 (5%)
Strand=Plus/Plus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||||| | | ||| | |||||||||||| ||||| | |||||| || || |||||
Sbjct 18680 ACCACCACGAAGTTTTAACAGAAGATGAAGAGTGGACTCATATTGAATGTTCTAGTCAGA 18739
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
|| || | |||||||| | || | | ||| || | | ||||| |||| ||
Sbjct 18740 CAAAGTACAGCCATCTTCCA--------CCTGTGATGATCAGCCTTGGCTGACCAGGGGG 18791
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
||||||||| |||||||| || || |||||||| || || | || || |||| |||
Sbjct 18792 AATTCCTTCCTTATCCTGGATCTTGTTCTTTACATTTTCTAT--AGTCCGAAGGTTGAAC 18849
Query 140690 TTCAAGTGTAACTGTCTTTCC 140710
|||||| | | || |||||
Sbjct 18850 CTCAAGTATGATAGTTTTTCC 18870
>seq107319
Length=1503807
Score = 105 bits (116), Expect = 2e-17
Identities = 129/177 (73%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 54779 CCACCAACAAATTGTTCAGCTGGAGTAATAGATGATGATATTTTTCATTGGCAAGCAACA 54838
|| ||| || | ||||| || || | | | ||||| || |||||||||||||| |||
Sbjct 1201740 CCTCCAGCACAATGTTCTGCAGGTCCAGTTGGAGATGACATGTTTCATTGGCAAGCCACA 1201799
Query 54839 ATTATGGGACCAGAAGATACCCCGTATCAAGGTGGTATATTTGAGTTAAGAATTGATTTT 54898
|||||| |||| | || | ||| |||||||||||| |||| || | |||| |||||
Sbjct 1201800 ATTATGAGACCTAATGACAACCCATATCAAGGTGGTGTATTCTTTTTGANAATTCATTTT 1201859
Query 54899 CCACAAGATTATCCATTTAAACCTCCAAATGTAGTTTTTACTACAAAGATTTATCAT 54955
|| ||| || || || ||||| || || || | ||||| | || |||||||||
Sbjct 1201860 CCTACAGACTACCCCTTCAAACCACCTAAGGTTGCATTTACAAAAANAATTTATCAT 1201916
>seq28181
Length=44540
Score = 104 bits (114), Expect = 7e-17
Identities = 153/215 (71%), Gaps = 3/215 (1%)
Strand=Plus/Plus
Query 54741 AACGGTTAAATAAGGAGTTAGCTGATATAAATAGTAATCCACCAACAAATTGTTCAGCTG 54800
||||| | |||||| | |||| |||| | || | || ||| || | ||||| || |
Sbjct 27160 AACGGATTAATAAGAATTTAG-TGATTTGGCCCGTGACCCTCCAGCACAATGTTCTGCAG 27218
Query 54801 GAGTAATAGATGATGATATTTTTCATTGGCAAGCAACAATTATGGGACCAGAAGATACCC 54860
| | | | ||||| || ||| |||||||||| |||||||||||||| | || | ||
Sbjct 27219 GTCCAGTTGGAGATGACATGTTTAATTGGCAAGCCACAATTATGGGACCTAATGACAGCC 27278
Query 54861 CGTATCAAGGTGGTATATTTGAGTTAAGAATTGATTTTCCACAAGATTATCCATTTAAAC 54920
| |||||| ||||| |||| || | |||| ||||||| |||| || || || ||||
Sbjct 27279 CATATCAAAGTGGTGTATTCTTTTTGACAATTCATTTTCCTAAAGACTACCCCTTNAAAC 27338
Query 54921 CTCCAAATGTAGTTTTTACTACAAAGATTTATCAT 54955
| || || || ||||| | || |||||||||
Sbjct 27339 CACCTAAGGT--CATTTACAATAAGAATTTATCAT 27371
>seq87143
Length=1077445
Score = 102 bits (112), Expect = 2e-16
Identities = 106/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667
||||||| | || || ||||| || || |||||| | ||||| |||||||||||||
Sbjct 611620 ATGCTGTGGTCACAGTGCCAGCTTACTTCAATGATTCTCAGCGACAGGCAACAAAAGATG 611679
Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727
|||| | ||||| || | ||||| || |||| || ||||| || |||||||| || |
Sbjct 611680 CTGGAACTATTGCTGGCCTCAATGTGCTTCGAATTATCAATGAGCCAACTGCTGCTGCTA 611739
Query 349728 TTGCATATGGGCTTGATAA 349746
|||| |||||| | |||||
Sbjct 611740 TTGCTTATGGGTTAGATAA 611758
Score = 86.0 bits (94), Expect = 2e-11
Identities = 155/224 (69%), Gaps = 2/224 (1%)
Strand=Plus/Plus
Query 350082 GTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAA 350141
||||||| |||||||||||| | || || || |||| || |||| ||||| ||||
Sbjct 612200 GTGCTCGATTTGAAGAATTAAATGCTGACCTGTTCAGAGGCACTCTGGACCCTGTAGAAA 612259
Query 350142 AAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTG 350201
| | | |||||| ||| | ||| ||||| |||| | || | || ||||
Sbjct 612260 AGGCCCTTCGAGATGCCAAACTAGACAAGTCACAGATCCATGACATTGTCCTGGTGGGTG 612319
Query 350202 GTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC 350261
||||||| | || || || |||| || | || || || || ||||| |||||||
Sbjct 612320 GTTCTACCAGAATCCCCAAGATTCAGAAGCTTCTGCAGGACTTCTTCAATGGAAAAGAAC 612379
Query 350262 CTTCT-AGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304
| ||| | ||||| || |||||||||||||| ||||||||
Sbjct 612380 TGAATAAGAGC-ATTAACCCCGATGAAGCTGTTGCTTATGGTGC 612422
>seq55092
Length=657151
Score = 100 bits (110), Expect = 9e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236
||||||||| | ||| | |||||||| ||||| || |||||||| |||| ||||| |
Sbjct 237828 ATTGATGAAATTGTTCTTGTTGGTGGGTCTACTCGAATTCCAAAGATTCAGCAGTTGGTG 237887
Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296
||||| || |||||||| || || || | || || || ||||| ||||| ||
Sbjct 237888 AAAGAGTTCTTCAATGGCAAGGAGCCATCCCGTGGCATAAACCCCGATGAGGCTGTAGCG 237947
Query 350297 TATGGTGCTGCTGTTCAGGC 350316
|||||||||||||| |||||
Sbjct 237948 TATGGTGCTGCTGTCCAGGC 237967
Score = 93.3 bits (102), Expect = 1e-13
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667
|||| ||| ||||||||||||| || || |||||||||||||| ||||| |||||||
Sbjct 237027 ATGCAGTTGTTACTGTACCAGCTTACTTCAATGATGCCCAGCGGCAAGCAACCAAAGATG 237086
Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713
|||||| |||||| || | ||||| | || || || ||||| ||
Sbjct 237087 CTGGCACCATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 237132
>seq44705
Length=104105
Score = 98.7 bits (108), Expect = 3e-15
Identities = 153/215 (71%), Gaps = 3/215 (1%)
Strand=Plus/Minus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
|||||||| | ||||| ||||||||||| || || || ||| |||| || || |||||
Sbjct 16999 ACCACCACAAAGTCTTAACACAAGATGAAG-GTGGAATCCTTT-GAATGTTGTAGTCAGA 16942
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
| | | |||| ||||| || ||||||||||| || ||| |||| |||| |
Sbjct 16941 CAGAGCACATTACTCTTGGAGTTGCTTACCAGCAAAGATCAGCTTTTGTTGATTAGGAAG 16882
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
||||| ||| |||||||| | ||| || |||| | || |||| || || |||||| |
Sbjct 16881 AATTCTTTC-TTATCCTGGACTTTGGCCTTTATGGTTTCCATCGTGTCTGACGGTTCAGC 16823
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTA 140724
| ||||| | | ||| || || || || ||||
Sbjct 16822 CTTGAGTGTGATGGCCTTCCCCGTAAGGGTCTTTA 16788
>seq27378
Length=944821
Score = 96.9 bits (106), Expect = 1e-14
Identities = 128/177 (72%), Gaps = 3/177 (2%)
Strand=Plus/Plus
Query 54779 CCACCAACAAATTGTTCAGCTGGAGTAATAGATGATGATATTTTTCATTGGCAAGCAACA 54838
|| ||| || | ||||| || || | | | ||||| || |||||||||||||| |||
Sbjct 56083 CCTCCAGCACAATGTTCTGCAGGTCCAGTTGGAGATGACATGTTTCATTGGCAAGCCACA 56142
Query 54839 ATTATGGGACCAGAAGATACCCCGTATCAAGGTGGTATATTTGAGTTAAGAATTGATTTT 54898
||||||||||| | || | |||||||||||||||| ||| | | |||| |||||
Sbjct 56143 ATTATGGGACCTAATGACAGCCCGTATCAAGGTGGTGAATTCTTTCTGACAATTCATTTT 56202
Query 54899 CCACAAGATTATCCATTTAAACCTCCAAATGTAGTTTTTACTACAAAGATTTATCAT 54955
|| ||| || || || ||||| || || || | || ||||| |||||||||
Sbjct 56203 CCTACAGACTACCCCTTCAAACCACCTAAGGTTGCATT---TACAAGAATTTATCAT 56256
>seq66333
Length=364213
Score = 95.1 bits (104), Expect = 4e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 378237 ACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATG 378296
|||||| | | ||| ||||| || || || || | ||| | || || ||||| |||||
Sbjct 184968 ACCAGTCTCAGCAGTCTTAACAGCTGTGTCGATAAGACCCTCTCGTCCTCCCATGGCATG 185027
Query 378297 GAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGC 378356
|||||| || ||||| || ||||| ||| | | |||| |||| | ||| |||||
Sbjct 185028 GAAGAAGAACTCAGTGGGTGTAAGACCAGCTAAGTATGAGTTCTCTACAAAGCCTCTNCT 185087
Query 378357 GCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGG 378416
| || || ||||| || || | ||||| | || |||| || ||| ||| ||||
Sbjct 185088 CTCAGGACCATAATCATCCTTGATAAAGTGAGGAAGAGTCCGATGCTTAAATCCAAATGG 185147
Query 378417 AATTCGTTTTCCATCAACATTCTGTTGACCAA 378448
|| ||||| || || || ||||| || ||||
Sbjct 185148 GATCCGTTTGCCCTCCACGTTCTGCTGCCCAA 185179
>seq97156
Length=413001
Score = 91.5 bits (100), Expect = 4e-13
Identities = 138/194 (71%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||| |||| | | ||| | |||||||||||| | ||||||||||||| || || ||
Sbjct 395497 CATATCACCTCAAAGTCTCAACACAAGATGAAGAATGGACTCTTTTTGAACGTTGTAGTC 395438
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
||| || | | || ||||| || || || || | |||||| | | || || || |
Sbjct 395437 AGACAA-ATATGTCCGTCTTCCAGCTGCTTACCCAC-AAGATTGGCCTCTGTTGGCCAAG 395380
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||||||||| | |||||| || || || ||||||| | | || || |||
Sbjct 395379 AGGAATTCCTTCCTCATCCTGGATCTTGCCTCTTACATTTTATGTGATATATGAGGGTCT 395320
Query 140687 AACTTCAAGTGTAA 140700
|||||| |||||||
Sbjct 395319 AACTTCTAGTGTAA 395306
>seq21879
Length=1267
Score = 89.7 bits (98), Expect = 2e-12
Identities = 99/131 (76%), Gaps = 1/131 (1%)
Strand=Plus/Plus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||| | | ||| | ||||||||||| || ||||| |||||||| | | |||||
Sbjct 678 ACCACCAGGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGGAGTCAGA 737
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
|| | | |||||| || || | ||||| ||||| || | ||||||||||||||
Sbjct 738 CAAATTACAGA-ATCTTCCAGATGCTCACCAGCCAAGATCAGTCTGTGCTGATCAGGAGG 796
Query 140630 AATTCCTTCTT 140640
|||||||||||
Sbjct 797 AATTCCTTCTT 807
>seq17433
Length=217209
Score = 89.7 bits (98), Expect = 2e-12
Identities = 72/87 (83%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|||||||| || || ||||| || || || |||||||| || || || ||||| |||||
Sbjct 167045 TTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATC 166986
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCT 140636
|| | ||||||||||||||||||||||
Sbjct 166985 AGCCTTTGCTGATCAGGAGGAATTCCT 166959
>seq56319
Length=26720
Score = 87.8 bits (96), Expect = 5e-12
Identities = 157/228 (69%), Gaps = 6/228 (3%)
Strand=Plus/Minus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||| | | ||| | ||| ||||| || |||| | ||||| || || |||||
Sbjct 26536 ACCACCATGAAGTCTCACCACAGAATGAAAGGTGGACTTTCACTGAATGTTGTAGTCAGA 26477
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
|| | || | | |||| | || || |||||||| | ||||||||||| |||
Sbjct 26476 CAAAATACGGCATTTTTCA-GCTGCTTATCAGCAAAGCCT-----TTGCTGATCAGAAGG 26423
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
|||||| | | | |||| || || ||||||||| || || | ||| || |||| |||
Sbjct 26422 AATTCCAGCCTCAACCTGGATCTTGTTTTTTACATTTTCTATAGCATCTGAAGGTTTAAC 26363
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || | ||||| || | | || |||| ||||||| |||
Sbjct 26362 CTCAAGAGTGATGGTCTTCCCCATAAAGGTCTTTATGAAAATCTCCAT 26315
>seq27458
Length=327334
Score = 84.2 bits (92), Expect = 7e-11
Identities = 115/157 (73%), Gaps = 8/157 (5%)
Strand=Plus/Minus
Query 350275 TAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAA 350334
||| || |||||||||||||| |||||||| |||| |||| | ||| |||||||| |
Sbjct 88000 TAAGCCTGATGAAGCTGTTGCTTATGGTGCAGCTGCCCAGGTGGCCATTCTATCTGGAGA 87941
Query 350335 TAAGAGTTCTAAAATTGAT---GATCTATTACTACTAGATGTAACTCCACTTTCGCTTGG 350391
||| ||| | | || | ||| | | || | |||| || | ||||| |||||
Sbjct 87940 CAAG---TCTGAGAATGTTCGGGATTTGCTGCTCTTGAATGTCACCCGTCTTTCCCTTGG 87884
Query 350392 -ATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTAT 350427
|||| |||||||||||| ||| |||||||| || ||
Sbjct 87883 TATTA-AAACTTCTGGTGGAGTCATGACTGTCCTCAT 87848
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1512936869061519
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |