Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq73029 122 7e-23 >seq73029 Length=1854 Score = 122 bits (134), Expect = 7e-23 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||||||||||||||||||| ||||| || || || |||||||| || ||||| Sbjct 1546 CCCGTGATGTGTGCAATCATGTANGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGCACG 1487 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || |||||||||||||| || || || || ||||| || || || | | |||| Sbjct 1486 CCCAGGCCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACCACA 1427 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || |||||||| || |||| |||||||||| ||||||| Sbjct 1426 TAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATC 1388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391375374636799