Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq14694 89.7 6e-13 >seq14694 Length=1798513 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 59980 AACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTA 60039 ||||| | | || ||||| ||||||||| ||||||||||||||||| || | | Sbjct 774227 AACGTGTGGTGGCCTTTGCCGCCGTGGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCAA 774168 Query 60040 TTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTT 60099 | ||||||||||| || || || || ||||| ||||| | || ||||| ||||| ||| Sbjct 774167 TATTCTGGCTCAAGAAACGGGGACTGATGCCTGGCCTTACGTTTTCCAATGAGCTTATTA 774108 Query 60100 CCCGGGACGAGG 60111 | | ||||||| Sbjct 774107 GCAGAGACGAGG 774096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547706311863120