Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq66478 141 1e-28 seq7954 140 4e-28 seq97228 134 2e-26 seq66268 129 7e-25 seq117227 113 5e-20 seq97151 84.2 2e-11 >seq66478 Length=146994 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||| ||||||| | ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 11013 AATGAAAATCTTCATGAAGACCCTGACCGGCAAGACCATCACCCTNGAGGTGGAGCCCAG 11072 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||| || || ||||| || |||| || || || ||||| Sbjct 11073 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAAGAGGACATCCCCCCTGACCA 11132 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || |||||||| ||||| || | |||| | || || | ||||| || Sbjct 11133 GCAGCGACTCATCTTTGCTGGCAAGCAGCTGAAAGATGGCTGCACTCTTTCTGACTACAA 11192 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || || ||||| ||||| | ||||| Sbjct 11193 CATCCAGAAAGAGTCCACCCTGCACCTGGTCTTCCGTCTGAGAGGTGG 11240 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || || || || | || Sbjct 11242 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAAGTGGATCCCAGT 11301 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || |||| || |||| || || || |||||| Sbjct 11302 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGGTAAAGAGGACATCCCCCCTGACCAG 11361 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||| ||||| || || |||| | || || | ||||| || Sbjct 11362 CAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCTGCACTCTTTCTGACTACAAC 11421 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCT 27616 |||| || || ||||| || || | |||| Sbjct 11422 ATCCAGAAAGAGTCCACCCTGCACCAGGTCT 11452 >seq7954 Length=808569 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| | || ||||| ||||| |||| || || || || || || |||||||| | Sbjct 793642 ATGGAGATTTTTGTGAAGACCTTTACAGGGAAAACCATCACGCTCGAGGTTGAACCCTCA 793701 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||||||||||| || || ||||| ||||| ||||||||||| || ||| Sbjct 793702 GACACTATAGAAAATTTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 793761 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || || ||||||||||| || || |||| ||||| | | ||||| | Sbjct 793762 CAAAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAGC 793821 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| ||||| |||||||| || ||| | |||| ||||| Sbjct 793822 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCATGGTGG 793868 >seq97228 Length=228612 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| |||| || || || || || || |||||||| | Sbjct 211566 ATGCAGATTTTCGTGAAGACCCTTATGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 211625 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || || ||||| || || ||||||||||| || ||| Sbjct 211626 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGATCAG 211685 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || || ||||||||||| || || |||| ||||| | | ||||| || Sbjct 211686 CAAAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 211745 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| ||||| |||||||| || ||| | ||||| ||||| Sbjct 211746 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCGTGGTGG 211792 >seq66268 Length=907216 Score = 129 bits (142), Expect = 7e-25 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 27409 CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGAT 27468 || ||||| || ||||| || || |||||||| || ||||||||||| ||| | |||| Sbjct 480400 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGTGAC 480459 Query 27469 AGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 27528 | ||||| ||| | ||||| || || || |||||||| || || | || || |||||| Sbjct 480460 ACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCTACCTGAGCAGCAG 480519 Query 27529 CGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTC 27588 | || || |||||||| ||||| || ||||||| | || || | ||||| || ||| Sbjct 480520 AGGCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCGGCACTCTGTCGGACTACAACGTC 480579 Query 27589 CAAAAGGAATCCACTCTT-CATCTAGT--CTTGC 27619 || || | |||| |||| ||||| || ||||| Sbjct 480580 CAGAAAGGGTCCA-TCTTGCATCTGGTGCCTTGC 480612 >seq117227 Length=121535 Score = 113 bits (124), Expect = 5e-20 Identities = 162/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 || || || || || | ||| ||||| || || || || || || ||||||| | Sbjct 79287 ATTCAGATTTTCGTGAGGAC-CTTACAGGGAAAACCATCACGCTCAAGGTTGAACCCTCG 79345 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || || ||||| ||||| ||||||||||| || || Sbjct 79346 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATGAG 79405 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||||| |||||| || || |||| |||| | | ||||| || Sbjct 79406 CAGAGGCTGATCTTTGCTGCTAAGCAGCTGGAAGATGGCTGTACTTTGTCTGACTACAAC 79465 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| ||||| |||||||| || ||| | ||| ||||| Sbjct 79466 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTTATGGTGG 79512 >seq97151 Length=436015 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||||||||| ||| | || Sbjct 143094 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 143153 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| | ||||| || || || |||||||| || Sbjct 143154 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGG 143197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569459404207760