Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq66478 141 1e-28
seq7954 140 4e-28
seq97228 134 2e-26
seq66268 129 7e-25
seq117227 113 5e-20
seq97151 84.2 2e-11
>seq66478
Length=146994
Score = 141 bits (156), Expect = 1e-28
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||| ||||||| | ||||| || ||||||||||| || || || ||||| ||| | |
Sbjct 11013 AATGAAAATCTTCATGAAGACCCTGACCGGCAAGACCATCACCCTNGAGGTGGAGCCCAG 11072
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | ||||| ||| | ||||| || || ||||| || |||| || || || |||||
Sbjct 11073 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAAGAGGACATCCCCCCTGACCA 11132
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||||| || || |||||||| ||||| || | |||| | || || | ||||| ||
Sbjct 11133 GCAGCGACTCATCTTTGCTGGCAAGCAGCTGAAAGATGGCTGCACTCTTTCTGACTACAA 11192
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || ||||| || || || ||||| ||||| | |||||
Sbjct 11193 CATCCAGAAAGAGTCCACCCTGCACCTGGTCTTCCGTCTGAGAGGTGG 11240
Score = 120 bits (132), Expect = 3e-22
Identities = 153/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || |||||||| || || || || || || | ||
Sbjct 11242 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAAGTGGATCCCAGT 11301
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| | ||||| || || |||| || |||| || || || ||||||
Sbjct 11302 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGGTAAAGAGGACATCCCCCCTGACCAG 11361
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || |||||||| ||||| || || |||| | || || | ||||| ||
Sbjct 11362 CAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCTGCACTCTTTCTGACTACAAC 11421
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCT 27616
|||| || || ||||| || || | ||||
Sbjct 11422 ATCCAGAAAGAGTCCACCCTGCACCAGGTCT 11452
>seq7954
Length=808569
Score = 140 bits (154), Expect = 4e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||| | || ||||| ||||| |||| || || || || || || |||||||| |
Sbjct 793642 ATGGAGATTTTTGTGAAGACCTTTACAGGGAAAACCATCACGCTCGAGGTTGAACCCTCA 793701
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | |||||||||||| || || ||||| ||||| ||||||||||| || |||
Sbjct 793702 GACACTATAGAAAATTTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 793761
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | || || || ||||||||||| || || |||| ||||| | | ||||| |
Sbjct 793762 CAAAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAGC 793821
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||| ||||| |||||||| || ||| | |||| |||||
Sbjct 793822 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCATGGTGG 793868
>seq97228
Length=228612
Score = 134 bits (148), Expect = 2e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||| |||| || || || || || || |||||||| |
Sbjct 211566 ATGCAGATTTTCGTGAAGACCCTTATGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 211625
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | |||| | ||||| || || ||||| || || ||||||||||| || |||
Sbjct 211626 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGATCAG 211685
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | || || || ||||||||||| || || |||| ||||| | | ||||| ||
Sbjct 211686 CAAAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 211745
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||| ||||| |||||||| || ||| | ||||| |||||
Sbjct 211746 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCGTGGTGG 211792
>seq66268
Length=907216
Score = 129 bits (142), Expect = 7e-25
Identities = 159/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 27409 CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGAT 27468
|| ||||| || ||||| || || |||||||| || ||||||||||| ||| | ||||
Sbjct 480400 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGTGAC 480459
Query 27469 AGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 27528
| ||||| ||| | ||||| || || || |||||||| || || | || || ||||||
Sbjct 480460 ACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCTACCTGAGCAGCAG 480519
Query 27529 CGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTC 27588
| || || |||||||| ||||| || ||||||| | || || | ||||| || |||
Sbjct 480520 AGGCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCGGCACTCTGTCGGACTACAACGTC 480579
Query 27589 CAAAAGGAATCCACTCTT-CATCTAGT--CTTGC 27619
|| || | |||| |||| ||||| || |||||
Sbjct 480580 CAGAAAGGGTCCA-TCTTGCATCTGGTGCCTTGC 480612
>seq117227
Length=121535
Score = 113 bits (124), Expect = 5e-20
Identities = 162/227 (71%), Gaps = 1/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|| || || || || | ||| ||||| || || || || || || ||||||| |
Sbjct 79287 ATTCAGATTTTCGTGAGGAC-CTTACAGGGAAAACCATCACGCTCAAGGTTGAACCCTCG 79345
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | |||| | ||||| || || ||||| ||||| ||||||||||| || ||
Sbjct 79346 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATGAG 79405
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || ||||||| |||||| || || |||| |||| | | ||||| ||
Sbjct 79406 CAGAGGCTGATCTTTGCTGCTAAGCAGCTGGAAGATGGCTGTACTTTGTCTGACTACAAC 79465
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||| ||||| |||||||| || ||| | ||| |||||
Sbjct 79466 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTTATGGTGG 79512
>seq97151
Length=436015
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || |||||||| || ||||||||||| ||| | ||
Sbjct 143094 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 143153
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|| | ||| | ||| | ||||| || || || |||||||| ||
Sbjct 143154 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGG 143197
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569459404207760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |