Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq87223 104 3e-17 >seq87223 Length=339319 Score = 104 bits (114), Expect = 3e-17 Identities = 559/884 (63%), Gaps = 17/884 (2%) Strand=Plus/Plus Query 13670 GCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729 |||||| || |||||||| || ||||| || || || || || ||| | || ||||| Sbjct 189344 GCCCCTTAGTAAAGAAGAGGTAGACTTTCCAATTGCATATTCCATAGTGGTTCATCACAA 189403 Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789 ||| || ||| | || | ||||||||||||||||| || ||||| |||||||| | Sbjct 189404 GATTGAAATGCTTGATAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCAT 189463 Query 13790 CCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTG 13849 || |||||| || | | || || | | || || ||| || || Sbjct 189464 TCATGTGGACAAAAAAGCAGAGGAATCCTTTTTAGCTGCAGTGATGGGCATTGCATCCTG 189523 Query 13850 CTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCG 13909 ||| ||| || ||||| || | || | | || || || | ||||||||||| Sbjct 189524 CTTTGATAATGTCTTTGTGGCCAGCCAGTTGGAGAATGTTGTTTATGCATCCTGGAGTCG 189583 Query 13910 CGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTA 13969 || ||||| ||||||| ||| ||| ||||||| | | || |||| ||| Sbjct 189584 GGTTCAGGCTGACCTCAACTGTATGAAGGACCTGTATAGAATGAGTGCAAACTGGAAGTA 189643 Query 13970 CCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGC 14029 | || |||| || || || ||||| ||||| |||| |||||||| || || || || Sbjct 189644 CTTGATCAATCTTTGTGGTATGGATTTCCCTATCAAAACCAACCTAGAAATTGTCAGGAA 189703 Query 14030 GCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAAGCT 14089 ||| ||| | || || ||||| ||| || | ||| ||||| | ||||| Sbjct 189704 GCTCAAGTCACTCTCGGGTGAGAACAACCTAGAAACTGAGAAGATGCCTCAGAACAAGGA 189763 Query 14090 GCACCGCATCAGGAAGAGGCACGTGGTGGCCAGC---GGCGGCGTGGTGGTCAACACCGG 14146 | | | || |||| | ||| | |||| | | ||| | || |||||| || Sbjct 189764 GGAAAG-AT--GGAAAA--AACG-GTACGCCATCGTTGACGGGAAGCTGACCAACACGGG 189817 Query 14147 CAGGAA--CAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTT 14204 || | ||| || || || || |||| | || | ||| | || | || |||||| Sbjct 189818 --GGTAGTCAAAGCGCCACCTCCACTCAAAACTCCTCTTTTTTCAGGCAGTGCCTACTTT 189875 Query 14205 GCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATG 14264 | |||| |||| | | | || || || | | || | | ||||| Sbjct 189876 GTAGTCAGTAGGGAATATATAGGCTATGTGCTAGAAAATGAAAATATCCAAAAGTTCATG 189935 Query 14265 CACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATG 14324 | ||| ||||||| |||||||| || ||| |||| |||||||| | ||||| | Sbjct 189936 GAGTGGGCACAGGACACATACAGCCCGGATGAGTACCTCTGGGCCACTATCCAGAGGA-- 189993 Query 14325 TACGGGACGCCCGGGGGGATCCCCGTTCACGTC--AAGTACGACACCTCGGACATGTGGG 14382 | | || | || || || || ||| | | ||||| ||| || |||||| | Sbjct 189994 TCCCCGAAGTCCCTGGTTCTCTCCCCTCAAGCCATAAGTATGACTTGTCTGACATGAATG 190053 Query 14383 CCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGT 14442 | | ||||| ||||||||||| |||| || || ||| | ||||| || | | Sbjct 190054 CTGTTGCTAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTTTCCAAAGGCGCTCCTT 190113 Query 14443 ACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGA 14502 |||| || ||| ||| |||| || | | || |||| | ||||| | || ||| || Sbjct 190114 ACCCACCGTGCAGCGGGGTCCATGTGCGCTCCGTCTGTGTTTTCGGAGCTGGTGACTTGC 190173 Query 14503 AGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 |||| || || | ||| | |||||||| ||||| ||| Sbjct 190174 GGTGGATGCTTCGCACACACCACTTTTTCGCCAATAAGTTTGAC 190217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657756254068480