Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq75922 105 6e-18 seq66478 96.9 3e-15 seq27123 82.4 7e-11 >seq75922 Length=371470 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || | || || |||||| ||||| | || || || |||||||| || Sbjct 193957 ATGCAGATCTTCATGAAGACCCTGACCAGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 193898 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCAC-----CCG 27102 ||||| ||||||| ||||| || || || || || || ||||| || | ||| Sbjct 193897 GACTCCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCTCTCCCCG 193838 Query 27103 ATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATT 27162 | |||||| | | || | |||||||| || ||||||| | || |||| |||| Sbjct 193837 ACCAACAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATT 193778 Query 27163 ACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||||| || || ||||| ||| | || |||| | ||| || |||||||| Sbjct 193777 ACAACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 193725 >seq66478 Length=146994 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27003 AAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATG 27062 || || |||||||||||| | || || || || ||||| || ||| | ||||||| Sbjct 11029 AAGACCCTGACCGGCAAGACCATCACCCTNGAGGTGGAGCCCAGTGACACCATTGAGAAT 11088 Query 27063 GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATAC 27122 ||||| || || || || ||||| | ||| || || || || ||||| | || | Sbjct 11089 GTCAAGGCCAAGATCCAGGATAAAGAGGACATCCCCCCTGACCAGCAGCGACTCATCTTT 11148 Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182 || ||||| || || |||| | | || |||| || |||||||| || || ||||| Sbjct 11149 GCTGGCAAGCAGCTGAAAGATGGCTGCACTCTTTCTGACTACAACATCCAGAAAGAGTCC 11208 Query 27183 ACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| | || |||| || ||| || | |||||||| Sbjct 11209 ACCCTGCACCTGGTCTTCCGTCTGAGAGGTGGCAT 11243 >seq27123 Length=1658509 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/231 (68%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || | ||| ||||| | |||| | || |||| | ||||| | Sbjct 191469 CATGCAGATCTTGGTGACAACCCTGACAGACAAGACCATCACTCCAG--GTGGAGCTCAG 191412 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || ||| | ||| || || ||||||||||||||||| ||||| || || Sbjct 191411 CGACACCATCAAGAATGCCAAGGCTAAGATCCAAGACAAAGAAGGCATCCCACCTGACCA 191352 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | ||| | | || || | |||| || | ||| | || || ||||| Sbjct 191351 GCAGAGGCTGGTATTTGTCAGC-AAGAGCTGGAGGATGGCCATACCCTGTCTGACTACAA 191293 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| ||||| || |||| |||| || | |||||||| Sbjct 191292 CATCCAGAAAGAGTCTACCTTGCACCTGGTGCTGCGCCTGTGTGGTGGCAT 191242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434269431072960