Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq75922 105 6e-18
seq66478 96.9 3e-15
seq27123 82.4 7e-11
>seq75922
Length=371470
Score = 105 bits (116), Expect = 6e-18
Identities = 163/233 (70%), Gaps = 5/233 (2%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || | || || |||||| ||||| | || || || |||||||| ||
Sbjct 193957 ATGCAGATCTTCATGAAGACCCTGACCAGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 193898
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCAC-----CCG 27102
||||| ||||||| ||||| || || || || || || ||||| || | |||
Sbjct 193897 GACTCCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCTCTCCCCG 193838
Query 27103 ATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATT 27162
| |||||| | | || | |||||||| || ||||||| | || |||| ||||
Sbjct 193837 ACCAACAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATT 193778
Query 27163 ACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
||||||| || || ||||| ||| | || |||| | ||| || ||||||||
Sbjct 193777 ACAACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 193725
>seq66478
Length=146994
Score = 96.9 bits (106), Expect = 3e-15
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27003 AAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATG 27062
|| || |||||||||||| | || || || || ||||| || ||| | |||||||
Sbjct 11029 AAGACCCTGACCGGCAAGACCATCACCCTNGAGGTGGAGCCCAGTGACACCATTGAGAAT 11088
Query 27063 GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATAC 27122
||||| || || || || ||||| | ||| || || || || ||||| | || |
Sbjct 11089 GTCAAGGCCAAGATCCAGGATAAAGAGGACATCCCCCCTGACCAGCAGCGACTCATCTTT 11148
Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182
|| ||||| || || |||| | | || |||| || |||||||| || || |||||
Sbjct 11149 GCTGGCAAGCAGCTGAAAGATGGCTGCACTCTTTCTGACTACAACATCCAGAAAGAGTCC 11208
Query 27183 ACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| | || |||| || ||| || | ||||||||
Sbjct 11209 ACCCTGCACCTGGTCTTCCGTCTGAGAGGTGGCAT 11243
>seq27123
Length=1658509
Score = 82.4 bits (90), Expect = 7e-11
Identities = 158/231 (68%), Gaps = 3/231 (1%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || | ||| ||||| | |||| | || |||| | ||||| |
Sbjct 191469 CATGCAGATCTTGGTGACAACCCTGACAGACAAGACCATCACTCCAG--GTGGAGCTCAG 191412
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|||| | || ||| | ||| || || ||||||||||||||||| ||||| || ||
Sbjct 191411 CGACACCATCAAGAATGCCAAGGCTAAGATCCAAGACAAAGAAGGCATCCCACCTGACCA 191352
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| | | ||| | | || || | |||| || | ||| | || || |||||
Sbjct 191351 GCAGAGGCTGGTATTTGTCAGC-AAGAGCTGGAGGATGGCCATACCCTGTCTGACTACAA 191293
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || || ||||| ||||| || |||| |||| || | ||||||||
Sbjct 191292 CATCCAGAAAGAGTCTACCTTGCACCTGGTGCTGCGCCTGTGTGGTGGCAT 191242
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434269431072960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |