Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq73029 147 2e-30
>seq73029
Length=1854
Score = 147 bits (162), Expect = 2e-30
Identities = 129/161 (80%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
||||| || |||||||| || || || ||||| ||||||| |||||||| || | ||||
Sbjct 1377 GATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTGGTGAAT 1436
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
||||||||||| |||||||| || || | || ||||| ||||| | || ||||| |||
Sbjct 1437 GGGGAGCTGTCTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCTTC 1496
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
|||||||| || || || |||||||| |||||||| || ||
Sbjct 1497 AACATTGCCAGCTATGCCCTGCTCACNTACATGATTGCACA 1537
Score = 147 bits (162), Expect = 2e-30
Identities = 129/161 (80%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| || |||||||| |||||||| || || || ||||||||||| ||||| || | |||
Sbjct 1537 TGTGCAATCATGTANGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGCACGCCCAGGCCC 1478
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
|| ||||| || | || || |||||||| ||||||||||||||| | || ||||||||
Sbjct 1477 ATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACCACATAGAATTGA 1418
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
||||||| ||||| || || || |||||||| || |||||
Sbjct 1417 CAGAGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATC 1377
Score = 87.8 bits (96), Expect = 2e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522
|| || ||||| || |||| ||||||||||| | ||||| |||||| | || |||
Sbjct 569 GATTACTCGGGTCAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCATCAAAACCAAC 628
Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563
|||||||||||||| ||| | ||||| || |||||||||||
Sbjct 629 CCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCGAA 669
Score = 87.8 bits (96), Expect = 2e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG 6841
||||||||||| || ||||| | ||| ||||||||||||||||| || | ||||||
Sbjct 669 TTCGGGTTCCAGGCACACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCA 610
Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTC 6882
||||| | ||||||||||| |||| || ||||| || ||
Sbjct 609 ATCACTTTTTGCAGCTGGTCTACTCCTTGACCCGAGTAATC 569
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447593519656560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |