Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq73029 147 2e-30 >seq73029 Length=1854 Score = 147 bits (162), Expect = 2e-30 Identities = 129/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| || |||||||| || || || ||||| ||||||| |||||||| || | |||| Sbjct 1377 GATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTGGTGAAT 1436 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 ||||||||||| |||||||| || || | || ||||| ||||| | || ||||| ||| Sbjct 1437 GGGGAGCTGTCTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCTTC 1496 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || || || |||||||| |||||||| || || Sbjct 1497 AACATTGCCAGCTATGCCCTGCTCACNTACATGATTGCACA 1537 Score = 147 bits (162), Expect = 2e-30 Identities = 129/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| |||||||| || || || ||||||||||| ||||| || | ||| Sbjct 1537 TGTGCAATCATGTANGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGCACGCCCAGGCCC 1478 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || ||||| || | || || |||||||| ||||||||||||||| | || |||||||| Sbjct 1477 ATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACCACATAGAATTGA 1418 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| || || || |||||||| || ||||| Sbjct 1417 CAGAGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATC 1377 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522 || || ||||| || |||| ||||||||||| | ||||| |||||| | || ||| Sbjct 569 GATTACTCGGGTCAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCATCAAAACCAAC 628 Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 |||||||||||||| ||| | ||||| || ||||||||||| Sbjct 629 CCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCGAA 669 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG 6841 ||||||||||| || ||||| | ||| ||||||||||||||||| || | |||||| Sbjct 669 TTCGGGTTCCAGGCACACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCA 610 Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTC 6882 ||||| | ||||||||||| |||| || ||||| || || Sbjct 609 ATCACTTTTTGCAGCTGGTCTACTCCTTGACCCGAGTAATC 569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447593519656560