Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq66404 201 9e-47 seq92731 118 9e-22 seq73029 93.3 3e-14 >seq66404 Length=212649 Score = 201 bits (222), Expect = 9e-47 Identities = 186/236 (79%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1290 ATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAAT 1349 ||||| |||||||| || ||||| ||||||||||||||||| ||||| || || Sbjct 31251 ATTGTGACATGGCAGAAGAAGAAAGCTGTAAGCCCAGAAAACATGGTCACTTACAGCAAA 31192 Query 1350 GACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGA 1409 | ||| |||||||| || ||||| ||||| | ||| || |||||||| |||||||| ||| Sbjct 31191 GCCCATGGGGTTGTAGTCCAGCCTGCATATAGAGACAAGATGAACATCACTGAGCTGGGA 31132 Query 1410 CTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAG 1469 || ||||||| || ||||| |||||||||||| |||||||||| || ||||||| | Sbjct 31131 CTCTGGAACACAAGCATCACCTTTTGGAACACAACACTGGATGATGAGGGCTGCTACATG 31072 Query 1470 TGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 ||| | || || |||||| ||||||||||| ||||||| || || || ||||| Sbjct 31071 TGTCTCTTCAATACTTTTCATTCTGGGAAGATCTCAGGAACAGCCTGCCTCACCCT 31016 >seq92731 Length=1498 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || || |||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 804 GTGGTGGAAGAACTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 745 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || |||||||| || |||||||| || | || | |||| || |||||| Sbjct 744 TTCGGTGGGGTCATGTGTGTAGAGAGCGTCAACAGGGAGATGTCACCCCTGGTGGACAAC 685 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 684 ATCGCCCTGTGGATGACTGA 665 >seq73029 Length=1854 Score = 93.3 bits (102), Expect = 3e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| ||||||||||| || | || |||||||| | || || || Sbjct 1549 AGGCCCGTGATGTGTGCAATCATGTANGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 1490 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || ||||| ||||| ||| |||| |||||||| | |||||||| |||||||| || | Sbjct 1489 ACGCCCAGGCCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACC 1430 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| || |||| | | || || |||||||| |||| Sbjct 1429 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 1389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413873794930372