Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq66404 201 9e-47
seq92731 118 9e-22
seq73029 93.3 3e-14
>seq66404
Length=212649
Score = 201 bits (222), Expect = 9e-47
Identities = 186/236 (79%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 1290 ATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAAT 1349
||||| |||||||| || ||||| ||||||||||||||||| ||||| || ||
Sbjct 31251 ATTGTGACATGGCAGAAGAAGAAAGCTGTAAGCCCAGAAAACATGGTCACTTACAGCAAA 31192
Query 1350 GACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGA 1409
| ||| |||||||| || ||||| ||||| | ||| || |||||||| |||||||| |||
Sbjct 31191 GCCCATGGGGTTGTAGTCCAGCCTGCATATAGAGACAAGATGAACATCACTGAGCTGGGA 31132
Query 1410 CTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAG 1469
|| ||||||| || ||||| |||||||||||| |||||||||| || ||||||| |
Sbjct 31131 CTCTGGAACACAAGCATCACCTTTTGGAACACAACACTGGATGATGAGGGCTGCTACATG 31072
Query 1470 TGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525
||| | || || |||||| ||||||||||| ||||||| || || || |||||
Sbjct 31071 TGTCTCTTCAATACTTTTCATTCTGGGAAGATCTCAGGAACAGCCTGCCTCACCCT 31016
>seq92731
Length=1498
Score = 118 bits (130), Expect = 9e-22
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || || |||||| | |||||||| ||||||||| | ||||| || |||||||||
Sbjct 804 GTGGTGGAAGAACTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 745
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || |||||||| || |||||||| || | || | |||| || ||||||
Sbjct 744 TTCGGTGGGGTCATGTGTGTAGAGAGCGTCAACAGGGAGATGTCACCCCTGGTGGACAAC 685
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||| ||||||||| ||
Sbjct 684 ATCGCCCTGTGGATGACTGA 665
>seq73029
Length=1854
Score = 93.3 bits (102), Expect = 3e-14
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593
|| || || | ||| ||||||||||| || | || |||||||| | || || ||
Sbjct 1549 AGGCCCGTGATGTGTGCAATCATGTANGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 1490
Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653
|| ||||| ||||| ||| |||| |||||||| | |||||||| |||||||| || |
Sbjct 1489 ACGCCCAGGCCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACC 1430
Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694
||||| || |||| | | || || |||||||| ||||
Sbjct 1429 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 1389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 413873794930372
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |