Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq66478 86.0 5e-12
>seq66478
Length=146994
Score = 86.0 bits (94), Expect = 5e-12
Identities = 161/237 (68%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113
|| ||| ||||| | || || |||| || || ||| |||||| || || || || ||
Sbjct 11244 CATGCCACCTCTCAGACGGAAGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 11185
Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173
| ||| || | | || | ||||| ||||| ||||| || || ||||||||||| |
Sbjct 11184 AGAAAGAGTGCAGCCATCTTTCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGG 11125
Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233
||| | | |||||| ||| ||| || |||| || | | || || || | |||
Sbjct 11124 GGGGATGTCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTC 11065
Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290
||| || | ||||| | || || ||||| || || | ||||||| ||| || ||
Sbjct 11064 CACCTCNAGGGTGATGGTCTTGCCGGTCAGGGTCTTCATGAAGATTTTCATTTTGAC 11008
Score = 82.4 bits (90), Expect = 7e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| || ||| |||||| || || || || || | ||| || | | || || |||||
Sbjct 11444 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCCAGCTGC 11385
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
||||| ||||| || || ||||||||||| | ||| | | |||||| || ||| ||
Sbjct 11384 TTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGGATCTTG 11325
Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261
|||| || | | || || || | ||||| |||| ||||| | || || |||
Sbjct 11324 GCCTTGACATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTGATGGTCTTGCCTGTC 11265
Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284
|| || || |||||||| |||||
Sbjct 11264 AGGGTCTTCACAAAGATCTGCAT 11242
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428920671959549
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |