Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq97228 114 9e-21
seq117227 86.0 4e-12
>seq97228
Length=228612
Score = 114 bits (126), Expect = 9e-21
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||||| || ||||| | ||| ||||| ||||| ||||| ||||| ||
Sbjct 211563 AAGATGCAGATTTTCGTGAAGACCCTTATGGGGAAAACCATCACGCTCGAGGTTGAACCC 211622
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
|||||||| | |||| |||| || || || |||||||| | || || |||
Sbjct 211623 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGAT 211682
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| || | | || || || || || || |||||||| | || ||||| || |||
Sbjct 211683 CAGCAAAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 211742
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
||||| ||||| |||||||| | ||| | || || ||
Sbjct 211743 AACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAG 211780
>seq117227
Length=121535
Score = 86.0 bits (94), Expect = 4e-12
Identities = 151/219 (69%), Gaps = 1/219 (0%)
Strand=Plus/Plus
Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666
||| || ||||||||||| | | ||| || || ||||| ||||| ||| | ||||| |
Sbjct 79283 TAAGATTCAGATTTTCGTGAGGA-CCTTACAGGGAAAACCATCACGCTCAAGGTTGAACC 79341
Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| |||||||| | |||| |||| || || || || ||||| | || || ||
Sbjct 79342 CTCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 79401
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
| | ||| | | || ||||| | || || |||||||| | | ||||| || ||
Sbjct 79402 TGAGCAGAGGCTGATCTTTGCTGCTAAGCAGCTGGAAGATGGCTGTACTTTGTCTGACTA 79461
Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
|||||| ||||| |||||||| | ||| | || || ||
Sbjct 79462 CAACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAG 79500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337517843881484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |