Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq97228 149 1e-30 seq7954 149 1e-30 seq75922 122 2e-22 seq66268 107 5e-18 seq7963 93.3 1e-13 >seq97228 Length=228612 Score = 149 bits (164), Expect = 1e-30 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| ||||| || || ||||| || ||||| | ||||| || | |||||| Sbjct 211787 ACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 211728 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||||||||| || | ||| || || || ||||| || Sbjct 211727 ACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCC 211668 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| || || |||||||| ||| ||| ||| || ||||| |||| ||| || || | Sbjct 211667 TTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAG 211608 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| || || ||| | | || || | ||| | ||||| || Sbjct 211607 CGTGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCATCTT 211563 >seq7954 Length=808569 Score = 149 bits (164), Expect = 1e-30 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC 225553 ||||||||| ||||| || || ||||| || ||||| | |||| || | |||||| | Sbjct 793861 GAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTAC 793802 Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613 |||||||| |||||||| ||||||||||| || | ||| || || || ||||| |||| Sbjct 793801 GGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTT 793742 Query 225614 CCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACG 225673 |||| || |||||||| ||||| | ||| || |||||||||| ||| || || | || Sbjct 793741 CCTTATCCTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCG 793682 Query 225674 TGATCGTCTTGCCCGTCAAAGTTTT 225698 |||| || || || || || || || Sbjct 793681 TGATGGTTTTCCCTGTAAAGGTCTT 793657 >seq75922 Length=371470 Score = 122 bits (134), Expect = 2e-22 Identities = 159/220 (72%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| ||||| |||| |||||||| | | ||| | |||||| Sbjct 193741 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 193800 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGG-----GCGGAATACCTTCCT 225616 || |||||||| || || ||||| || | |||||||||| | || || || |||| Sbjct 193801 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCGGGGAGAGGGGGATGCCCTCCT 193860 Query 225617 TGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 | || |||||||| ||| ||| || |||| ||| || ||||| || | |||| Sbjct 193861 TATCCTGGATCTTGGCCTTGACATTCTCAATGGAGTCACTGGGCTCCACTTCCAGGGTGA 193920 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 | ||||||| |||| || || ||||| | |||||||| Sbjct 193921 TGGTCTTGCTGGTCAGGGTCTTCATGAAGATCTGCATTTT 193960 >seq66268 Length=907216 Score = 107 bits (118), Expect = 5e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 225518 TGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAG 225577 |||| |||| ||||| ||||| || | || ||| | ||||| || |||||||| |||| Sbjct 480592 TGGACCCTTTCTGGACGTTGTAGTCCGACAGAGTGCCGCCATCCTCCAGCTGCTTGCCAG 480533 Query 225578 CGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCA 225637 | || || || | || || || || | || |||||||||||||||||||| ||| | Sbjct 480532 CAAATATCAGCCTCTGCTGCTCAGGTAGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA 480473 Query 225638 CAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTT 225697 || || |||||||| || || || || | ||||| ||||||||||||| || | Sbjct 480472 CATTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCT 480413 Query 225698 TTATGAA 225704 | | ||| Sbjct 480412 TCACGAA 480406 >seq7963 Length=681008 Score = 93.3 bits (102), Expect = 1e-13 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||| || ||||| ||||| |||| |||||||| | | ||| | |||||| Sbjct 60898 AGGACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 60957 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||||||||| | || ||||| || | || ||||| || || || || ||||| || Sbjct 60958 TCTAGCTGCTTGCNGGCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCC 61017 Query 225622 TGGATCTTTTGCTTCA 225637 |||||||| ||||| Sbjct 61018 TGGATCTTGGCCTTCA 61033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190707263404862