Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq116961 134 1e-26
seq14694 100 2e-16
seq44856 89.7 4e-13
>seq116961
Length=993603
Score = 134 bits (148), Expect = 1e-26
Identities = 125/159 (79%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831
|| ||||| || ||||| || || | ||||| || ||||| ||| || ||||||| |
Sbjct 255312 GTGAAAACAGACATTCAGATAGCTGTTCCTTCTGGATGCTATGGAAGAGTAGCTCCAGGT 255371
Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891
||||| |||||||| |||| ||| || || || || || ||||| |||||| ||| |||
Sbjct 255372 TCTGGCTTGGCAGTAAAACCCTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGATTAT 255431
Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAA 31930
|||||||| ||||| ||||| |||||||||||||| ||
Sbjct 255432 AGAGGAAATGTTGGTGTTGTGCTGTTTAATTTTGGAAAA 255470
>seq14694
Length=1798513
Score = 100 bits (110), Expect = 2e-16
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| ||| |||||||| || || || || ||||| ||||||||||| ||||| || |||
Sbjct 775545 TCTTTAATGTAAGTGTCAATAAGGAGACTGTACATNTCAGAATGTATGTTTTCCATGGCA 775604
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931
||||| || || || || || | || ||||| ||||||||||| | | ||||| |||
Sbjct 775605 ATCTGGAAGCCATAGAAACAACGGGCCTCTGTGACTTGAACTTCTTGGCTAAATCGCTCT 775664
Query 4932 AC 4933
||
Sbjct 775665 AC 775666
Score = 95.1 bits (104), Expect = 1e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|||||||||||||| || || || |||||||| | || ||||| | || | || ||
Sbjct 774098 TCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 774157
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || ||||| ||||| || ||||| ||||||||||| ||
Sbjct 774158 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACGGCGGCAAAGGCC 774217
Query 4692 AC 4693
||
Sbjct 774218 AC 774219
>seq44856
Length=74269
Score = 89.7 bits (98), Expect = 4e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| || || || ||||| || || |||||||| ||||| |||||||||||||| ||||||
Sbjct 58067 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTTTCC 58008
Query 4320 ATAAAATCAAACGGATT 4336
||||||||||| |||||
Sbjct 58007 ATAAAATCAAAGGGATT 57991
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/130 (75%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980
|||||||| || |||||||| || || || || ||||||||||||||||| || || |
Sbjct 43813 AAAATCTT---ACCAAGTTTTCATTGACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 43757
Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040
|| || ||||| |||| || || | ||||| || |||||||| || | || || |
Sbjct 43756 TGTGGGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGGTCCTTTG 43697
Query 5041 TTAAATCAAC 5050
||| |||||
Sbjct 43696 ATAAGTCAAC 43687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426428303286209
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |