Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq116961 134 1e-26 seq14694 100 2e-16 seq44856 89.7 4e-13 >seq116961 Length=993603 Score = 134 bits (148), Expect = 1e-26 Identities = 125/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || ||||| || ||||| || || | ||||| || ||||| ||| || ||||||| | Sbjct 255312 GTGAAAACAGACATTCAGATAGCTGTTCCTTCTGGATGCTATGGAAGAGTAGCTCCAGGT 255371 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 ||||| |||||||| |||| ||| || || || || || ||||| |||||| ||| ||| Sbjct 255372 TCTGGCTTGGCAGTAAAACCCTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGATTAT 255431 Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAA 31930 |||||||| ||||| ||||| |||||||||||||| || Sbjct 255432 AGAGGAAATGTTGGTGTTGTGCTGTTTAATTTTGGAAAA 255470 >seq14694 Length=1798513 Score = 100 bits (110), Expect = 2e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || || ||||| ||||||||||| ||||| || ||| Sbjct 775545 TCTTTAATGTAAGTGTCAATAAGGAGACTGTACATNTCAGAATGTATGTTTTCCATGGCA 775604 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931 ||||| || || || || || | || ||||| ||||||||||| | | ||||| ||| Sbjct 775605 ATCTGGAAGCCATAGAAACAACGGGCCTCTGTGACTTGAACTTCTTGGCTAAATCGCTCT 775664 Query 4932 AC 4933 || Sbjct 775665 AC 775666 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| || || || |||||||| | || ||||| | || | || || Sbjct 774098 TCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 774157 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||| ||||| || ||||| ||||||||||| || Sbjct 774158 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACGGCGGCAAAGGCC 774217 Query 4692 AC 4693 || Sbjct 774218 AC 774219 >seq44856 Length=74269 Score = 89.7 bits (98), Expect = 4e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||||||||| |||||| Sbjct 58067 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTTTCC 58008 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 58007 ATAAAATCAAAGGGATT 57991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || |||||||| || || || || ||||||||||||||||| || || | Sbjct 43813 AAAATCTT---ACCAAGTTTTCATTGACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 43757 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 || || ||||| |||| || || | ||||| || |||||||| || | || || | Sbjct 43756 TGTGGGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGGTCCTTTG 43697 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 43696 ATAAGTCAAC 43687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426428303286209