Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq116961 125 1e-23
seq44403 118 1e-21
seq14694 89.7 7e-13
>seq116961
Length=993603
Score = 125 bits (138), Expect = 1e-23
Identities = 209/297 (70%), Gaps = 15/297 (5%)
Strand=Plus/Minus
Query 45940 TCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTATTTCA 45999
|| |||||| | || |||| | | || || || || || | |||||| | || | ||||
Sbjct 255538 TCTGGATAAAAGATCCGTTCAGAAATGAGCTGTGCAATCCGATCACCTTTTTTCACTTCA 255479
Query 46000 AATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTTCATCT 46059
|| | ||||||||| ||| | ||| | || |||| | ||||||||||||||||||
Sbjct 255478 AACTTCTCTTTTCCAAAATTAAACAGCACAACACCAACATTTCCTCTATAATCTTCATCT 255419
Query 46060 ATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGAGCTATT 46116
|| || || |||| ||||| || ||||| | || ||||| | ||||||| |
Sbjct 255418 ATGACACCAGCTCCTACATCTATGAAGGGTTTTACTGCCAAGCCAGAACCTGGAGCTACT 255359
Query 46117 CTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATCTCCT 46172
|||||||| ||||| || | || ||| |||| |||||||| | |||| ||
Sbjct 255358 CTTCCATAGCATCCAGAA----GGAACAGCTATCTGAATGTCTGTTTTCA-CAAT-GGCT 255305
Query 46173 TTCTCCA--GGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCTGCA 46227
||||||| || ||||| ||||| || || |||||||| | || || || || |||
Sbjct 255304 TTCTCCATGGGTGGGATTGTATAATCATAGGCACTGTACAGGTCGTAGCCCGCAGCA 255248
>seq44403
Length=740699
Score = 118 bits (130), Expect = 1e-21
Identities = 106/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| || || |||||||| || |||||||| || ||||| | |||
Sbjct 631766 TGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATGGAT 631707
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| || |||| ||| |||||||| || ||||| ||||| || || | | ||||||
Sbjct 631706 TCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAACTG 631647
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 631646 TTTCTTACACCAT 631634
Score = 111 bits (122), Expect = 2e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| || ||||| || | || ||||| || || |||||||| || |||||||| || |||
Sbjct 617605 GTCCCAGCATTGAAGAGAGTAGGAGAGGCGTGAGTAAACCACTTCTCAGAAAGCAGGTTG 617546
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
||||||||||| || | || || ||| || ||||| || || | ||| | |||||||
Sbjct 617545 TATGTTTCAATCGCAGCATCAATATCCTCTTTGTGAATCCCCACAGATACCCTCATCAAC 617486
Query 78519 ATATGCTGAGGTCTTTCAACC 78539
|||||||| ||||||||| ||
Sbjct 617485 ATATGCTGTGGTCTTTCAGCC 617465
Score = 111 bits (122), Expect = 2e-19
Identities = 127/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908
|||| |||||||| ||||| || || |||||| ||| |||| || || || || || |
Sbjct 634851 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 634792
Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968
| | ||||| ||||||||||||||||| ||||| || || ||||| || | || ||||
Sbjct 634791 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 634732
Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019
| |||| |||||||| | ||| || | | || || | ||||| ||||
Sbjct 634731 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTTAGGTCATCAGGAA 634681
Score = 93.3 bits (102), Expect = 6e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 77355 GATCCATTATATGTTTCATAAGGTCC-TTCTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413
|| || | ||| ||||||||||| || | || || ||||| ||||| || ||||||||
Sbjct 627715 GAGCCCTCATACGTTTCATAAGGGCCATACTCCTT-TGCTAGGTCACAGCTAGCTTCCAA 627657
Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473
||||| |||||||| ||||| || || | |||||| | || ||||| || ||
Sbjct 627656 AGCTCCATAATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGGGCTTCTGGGCTCTC 627597
Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533
||| || || | || || || |||||||||| || || || ||||| ||||| ||
Sbjct 627596 AAAGGGGTATCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGG 627537
Query 77534 TCTATGTCTCTTATTGGA 77551
| ||| | ||||| ||
Sbjct 627536 CCGATGGCGTTTATTTGA 627519
Score = 86.0 bits (94), Expect = 9e-12
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984
|||||||| ||||||||||| ||||||| ||||| || |||||||| ||||||||||||
Sbjct 624965 TCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACACTCATTTGGACACATCAATGAC 624906
Query 77985 CAGTC 77989
|||||
Sbjct 624905 CAGTC 624901
>seq14694
Length=1798513
Score = 89.7 bits (98), Expect = 7e-13
Identities = 104/139 (75%), Gaps = 5/139 (4%)
Strand=Plus/Plus
Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA----GACATAACTCCCATTT 47850
||| || ||| |||| || | |||| ||| ||| |||| ||||| || |||||
Sbjct 772101 TTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTCGACATCACCCCCATCC 772159
Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910
| || ||||| ||||| || ||||| || || || || || ||||| | ||| |||||||
Sbjct 772160 TCTGGTATTCTCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTT 772219
Query 47911 CCATAAAATCAAATGGATT 47929
|||| || |||||||||||
Sbjct 772220 CCATGAAGTCAAATGGATT 772238
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 693632241266720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |