Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq116961 125 1e-23 seq44403 118 1e-21 seq14694 89.7 7e-13 >seq116961 Length=993603 Score = 125 bits (138), Expect = 1e-23 Identities = 209/297 (70%), Gaps = 15/297 (5%) Strand=Plus/Minus Query 45940 TCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTATTTCA 45999 || |||||| | || |||| | | || || || || || | |||||| | || | |||| Sbjct 255538 TCTGGATAAAAGATCCGTTCAGAAATGAGCTGTGCAATCCGATCACCTTTTTTCACTTCA 255479 Query 46000 AATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTTCATCT 46059 || | ||||||||| ||| | ||| | || |||| | |||||||||||||||||| Sbjct 255478 AACTTCTCTTTTCCAAAATTAAACAGCACAACACCAACATTTCCTCTATAATCTTCATCT 255419 Query 46060 ATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGAGCTATT 46116 || || || |||| ||||| || ||||| | || ||||| | ||||||| | Sbjct 255418 ATGACACCAGCTCCTACATCTATGAAGGGTTTTACTGCCAAGCCAGAACCTGGAGCTACT 255359 Query 46117 CTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATCTCCT 46172 |||||||| ||||| || | || ||| |||| |||||||| | |||| || Sbjct 255358 CTTCCATAGCATCCAGAA----GGAACAGCTATCTGAATGTCTGTTTTCA-CAAT-GGCT 255305 Query 46173 TTCTCCA--GGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCTGCA 46227 ||||||| || ||||| ||||| || || |||||||| | || || || || ||| Sbjct 255304 TTCTCCATGGGTGGGATTGTATAATCATAGGCACTGTACAGGTCGTAGCCCGCAGCA 255248 >seq44403 Length=740699 Score = 118 bits (130), Expect = 1e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| || || |||||||| || |||||||| || ||||| | ||| Sbjct 631766 TGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATGGAT 631707 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| ||| |||||||| || ||||| ||||| || || | | |||||| Sbjct 631706 TCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAACTG 631647 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 631646 TTTCTTACACCAT 631634 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| || || |||||||| || |||||||| || ||| Sbjct 617605 GTCCCAGCATTGAAGAGAGTAGGAGAGGCGTGAGTAAACCACTTCTCAGAAAGCAGGTTG 617546 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| || | || || ||| || ||||| || || | ||| | ||||||| Sbjct 617545 TATGTTTCAATCGCAGCATCAATATCCTCTTTGTGAATCCCCACAGATACCCTCATCAAC 617486 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 |||||||| ||||||||| || Sbjct 617485 ATATGCTGTGGTCTTTCAGCC 617465 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| ||||| || || |||||| ||| |||| || || || || || | Sbjct 634851 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 634792 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| ||||||||||||||||| ||||| || || ||||| || | || |||| Sbjct 634791 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 634732 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | |||| |||||||| | ||| || | | || || | ||||| |||| Sbjct 634731 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTTAGGTCATCAGGAA 634681 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 77355 GATCCATTATATGTTTCATAAGGTCC-TTCTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413 || || | ||| ||||||||||| || | || || ||||| ||||| || |||||||| Sbjct 627715 GAGCCCTCATACGTTTCATAAGGGCCATACTCCTT-TGCTAGGTCACAGCTAGCTTCCAA 627657 Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473 ||||| |||||||| ||||| || || | |||||| | || ||||| || || Sbjct 627656 AGCTCCATAATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGGGCTTCTGGGCTCTC 627597 Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533 ||| || || | || || || |||||||||| || || || ||||| ||||| || Sbjct 627596 AAAGGGGTATCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGG 627537 Query 77534 TCTATGTCTCTTATTGGA 77551 | ||| | ||||| || Sbjct 627536 CCGATGGCGTTTATTTGA 627519 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| ||||||||||| ||||||| ||||| || |||||||| |||||||||||| Sbjct 624965 TCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACACTCATTTGGACACATCAATGAC 624906 Query 77985 CAGTC 77989 ||||| Sbjct 624905 CAGTC 624901 >seq14694 Length=1798513 Score = 89.7 bits (98), Expect = 7e-13 Identities = 104/139 (75%), Gaps = 5/139 (4%) Strand=Plus/Plus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA----GACATAACTCCCATTT 47850 ||| || ||| |||| || | |||| ||| ||| |||| ||||| || ||||| Sbjct 772101 TTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTCGACATCACCCCCATCC 772159 Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910 | || ||||| ||||| || ||||| || || || || || ||||| | ||| ||||||| Sbjct 772160 TCTGGTATTCTCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTT 772219 Query 47911 CCATAAAATCAAATGGATT 47929 |||| || ||||||||||| Sbjct 772220 CCATGAAGTCAAATGGATT 772238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693632241266720