Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq44403 123 4e-23 seq116961 114 2e-20 >seq44403 Length=740699 Score = 123 bits (136), Expect = 4e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| || || |||||||| || |||||||| || ||||| | ||| Sbjct 631766 TGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATGGAT 631707 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| ||| ||||||||||| ||||| ||||| || || | | |||||| Sbjct 631706 TCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAACTG 631647 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 631646 TTTCTTACACCAT 631634 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | |||||||| || ||||| ||||| || |||||||| || ||| Sbjct 617605 GTCCCAGCATTGAAGAGAGTAGGAGAGGCGTGAGTAAACCACTTCTCAGAAAGCAGGTTG 617546 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||||||| | || || |||||| || ||||| || |||| || | ||||||| Sbjct 617545 TATGTTTCAATCGCAGCATCAATATCCTCTTTGTGAATCCCCACAGATACCCTCATCAAC 617486 Query 77114 ATATGCTGAGGTCGTTC 77130 |||||||| |||| ||| Sbjct 617485 ATATGCTGTGGTCTTTC 617469 Score = 105 bits (116), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| ||||| || || |||||| ||| | || || || || || || | Sbjct 634851 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 634792 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| ||||||||||||||||| ||||| || || ||||| || | || |||| Sbjct 634791 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 634732 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | |||| |||||||| | ||| || | | || || | ||||| |||| Sbjct 634731 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTTAGGTCATCAGGAA 634681 Score = 100 bits (110), Expect = 4e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 77337 CGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAA 77396 |||| || | ||| |||||||| ||||| | || || || || || || || |||| | Sbjct 612571 CGCTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 612512 Query 77397 TTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTA 77456 | ||||||||||| || | ||||| |||| || ||| | ||||| || | |||||| | Sbjct 612511 TAGCATAGTCAGGGTGCTTCGTAGTCAAGGTTGCAGCTGTCTCTGCAGCCAGAGTATCCA 612452 Query 77457 ATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 ||| | || || || || |||| || ||||| || |||||||||| Sbjct 612451 GTTCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCATGG 612404 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 ||||||| |||||||| ||||||||||| ||||||| ||||||||| ||||| ||||| Sbjct 624975 ATATAACTTCTCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACACTCATTTGGACA 624916 Query 76570 CATCAATGACCACTC 76584 |||||||||||| || Sbjct 624915 CATCAATGACCAGTC 624901 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 || || | ||| ||||| |||| || | || | ||||| || || || || || || Sbjct 627715 GAGCCCTCATACGTTTCATAAGGGCCATACTCCTTTGCTAGGTCACAGCTAGCTTCCAAA 627656 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTTGCGCTTCAAGACTATC 76068 || || |||||||| ||||| || || | |||||| || | || | ||||| | || || Sbjct 627655 GCTCCATAATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGG-GCTTCTGGGCTCTC 627597 Query 76069 AAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGG 76128 ||| || || | || || || ||||||||||| || || || ||||| ||||| || Sbjct 627596 AAAGGGGTATCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGG 627537 Query 76129 TCTATGTCTCTTATTGGA 76146 | ||| | ||||| || Sbjct 627536 CCGATGGCGTTTATTTGA 627519 >seq116961 Length=993603 Score = 114 bits (126), Expect = 2e-20 Identities = 210/303 (69%), Gaps = 15/303 (5%) Strand=Plus/Minus Query 44421 TCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCTGTATTT 44480 |||| || |||||| | || |||| | | || || || || || | ||||||| | || Sbjct 255544 TCTAAGTCTGGATAAAAGATCCGTTCAGAAATGAGCTGTGCAATCCGATCACCTTTTTTC 255485 Query 44481 ATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCCCCTATAATCT 44540 | || ||| | ||||||||| ||| | || | || |||| || || ||||||||| Sbjct 255484 ACTTCAAACTTCTCTTTTCCAAAATTAAACAGCACAACACCAACATTTCCTCTATAATCT 255425 Query 44541 TCATCTATTACTCCACCTCCCACATCAAT---ACCTTTTAGAGAAAGACCCGATCTAGGC 44597 |||||||| || ||| |||| ||||| || ||||| | | || || | || Sbjct 255424 TCATCTATGACACCAGCTCCTACATCTATGAAGGGTTTTACTGCCAAGCCAGAACCTGGA 255365 Query 44598 GCTATTCTTCCATA----ACAGAATTTTGGCATAGACATACGAATATCTGTTTTAATCAA 44653 |||| ||||||||| ||||| || | || || |||| |||||||| | ||| Sbjct 255364 GCTACTCTTCCATAGCATCCAGAA----GGAACAGCTATCTGAATGTCTGTTTTCA-CAA 255310 Query 44654 CCGTCTTTCTCCA--GGAGGGATAGTATAATCGTAAGCACTGTATAAATCATATCCTGCC 44711 | ||||||||| || ||||| |||||||| || |||||||| | || || || || Sbjct 255309 -TGGCTTTCTCCATGGGTGGGATTGTATAATCATAGGCACTGTACAGGTCGTAGCCCGCA 255251 Query 44712 GCA 44714 ||| Sbjct 255250 GCA 255248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711870586023360