Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq73029 87.8 7e-13 >seq73029 Length=1854 Score = 87.8 bits (96), Expect = 7e-13 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168 ||||| || |||| |||||| | || | ||||||||||| | |||| || |||| || Sbjct 1389 ATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGT-GGTGAATGGGGAGCTGTC 1447 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| | || ||| |||| | || ||| | ||||||| || || ||||||||||| Sbjct 1448 TTGCCAGCTTTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCTTCAACATTGCCAG 1507 Query 52229 CTATTCCTTGCTGACGCATCTGATTGC 52255 |||| || |||| || | ||||||| Sbjct 1508 CTATGCCCTGCTCACNTACATGATTGC 1534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189826528583530