Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq97228 120 7e-22
seq75922 114 3e-20
seq66268 107 4e-18
seq7954 105 2e-17
seq117227 100 7e-16
seq7963 96.9 8e-15
seq66478 91.5 3e-13
>seq97228
Length=228612
Score = 120 bits (132), Expect = 7e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| | ||||||||||| || ||||| ||||| |||||||| || | ||||| |
Sbjct 211783 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGG 211724
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|||||||| || || || |||||||| ||||| ||||| || | | ||||||||
Sbjct 211723 CCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCT 211664
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
|| || || || || || ||| | |||| |||| || || || || || ||
Sbjct 211663 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 211604
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| ||||| ||| | || ||||||||||| | |||||| ||
Sbjct 211603 ATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCATCTT 211563
>seq75922
Length=371470
Score = 114 bits (126), Expect = 3e-20
Identities = 166/233 (71%), Gaps = 11/233 (5%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
||| || | |||||| || || || || |||||||| |||||||||||||| | | |||
Sbjct 193731 CCTCAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGT 193790
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCG-----CCGAG 151997
| |||||||| || || ||||| ||||| |||||||| ||||| | | |
Sbjct 193791 GCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCGGGGAGAGGGGG 193850
Query 151998 ATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCT 152054
|| || ||||| || || || || |||||| |||| | | ||| ||| |||
Sbjct 193851 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGAGTC---ACTGGGCTCC 193907
Query 152055 ACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
||||| || || || || |||| || || ||||||| ||||| |||||||||
Sbjct 193908 ACTTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCATGAAGATCTGCATTTT 193960
>seq66268
Length=907216
Score = 107 bits (118), Expect = 4e-18
Identities = 152/210 (72%), Gaps = 8/210 (4%)
Strand=Plus/Minus
Query 151896 ACAAGATG-AAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954
|| ||||| |||| | ||| |||| |||| |||||| || | | ||| | ||||| ||
Sbjct 480605 ACCAGATGCAAGA-TGGACCCTTTCTGGACGTTGTAGTCCGACAGAGTGCCGCCATCCTC 480547
Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
|| || || || || || ||||||||||| || | ||| |||||||| |||||
Sbjct 480546 CAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGCTCAGGTAGGATGCCTTCCTTGTCTTG 480487
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGT 152071
|| || |||||| |||| | | |||| ||| ||| || |||||||| || ||
Sbjct 480486 GATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGT 480430
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101
|||||||| || ||||||||||||| |||
Sbjct 480429 CTTGCCCGTCAGGGTCTTCACGAAGATCTG 480400
>seq7954
Length=808569
Score = 105 bits (116), Expect = 2e-17
Identities = 156/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| | ||||||||||| || ||||| ||||| ||| |||| || | ||||| |
Sbjct 793859 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGG 793800
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|||||||| || || || |||||||| ||||| ||||| || | | |||||||||
Sbjct 793799 CCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCC 793740
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
|| || || || || || | | | |||| ||||||| || || || || ||
Sbjct 793739 TTATCCTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTG 793680
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| ||||| || || | |||||||| || | || ||| ||
Sbjct 793679 ATGGTTTTCCCTGTAAAGGTCTTCACAAAAATCTCCATCTT 793639
>seq117227
Length=121535
Score = 100 bits (110), Expect = 7e-16
Identities = 156/222 (70%), Gaps = 1/222 (0%)
Strand=Plus/Minus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| | ||||||||||| || ||||| ||||| |||||||| || | ||||| |
Sbjct 79503 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAG 79444
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|||||||| || || | || ||||| |||||||||| || | | |||||||||
Sbjct 79443 CCATCTTCCAGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGGAATTCCTTCC 79384
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
|| || || || || || ||| | |||| |||| || || || | || ||
Sbjct 79383 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGTG 79324
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108
|| ||||| || || || ||| ||||||| | ||| || |||
Sbjct 79323 ATGGTTTTCCCTGTAAG-GTCCTCACGAAAATCTGAATCTTA 79283
>seq7963
Length=681008
Score = 96.9 bits (106), Expect = 8e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
||| || | |||||| || | || || |||||||| |||||||||||||| | | |||
Sbjct 60888 CCTCAGACGGAGGACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGT 60947
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| ||||||||||| || | ||| ||||| |||||||||||||||| | ||| ||
Sbjct 60948 GCGGCCATCTTCTAGCTGCTTGCNGGCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCC 61007
Query 152003 TTCCTTTTCTTGAATTTT 152020
||||| || || || ||
Sbjct 61008 CTCCTTATCCTGGATCTT 61025
>seq66478
Length=146994
Score = 91.5 bits (100), Expect = 3e-13
Identities = 157/227 (69%), Gaps = 6/227 (3%)
Strand=Plus/Minus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
|| || | || ||| || || || || |||||||| ||||||||||| || | | |||
Sbjct 11234 CTCAGACGGAAGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTG 11175
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
| ||||||| || || || || ||||| || | ||||||||| | | ||| |
Sbjct 11174 CAGCCATCTTTCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCC 11115
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060
|| || || || || || |||||| |||| | | |||| ||| ||| || ||
Sbjct 11114 TCTTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCN 11058
Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| || || || ||||| || || ||||||| ||||| | ||||||
Sbjct 11057 AGGGTGATGGTCTTGCCGGTCAGGGTCTTCATGAAGATTTTCATTTT 11011
Score = 89.7 bits (98), Expect = 1e-12
Identities = 144/206 (70%), Gaps = 6/206 (3%)
Strand=Plus/Minus
Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961
|| || || |||||||| ||||||||||| || | | ||| | |||||||| ||
Sbjct 11444 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCCAGCTGC 11385
Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021
|| || || ||||| || | ||||||||| | | ||| | || || | || || ||
Sbjct 11384 TTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGGATCTTG 11325
Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCC 152078
|||||| |||| | | |||| ||| || ||||| || || || || |||||
Sbjct 11324 GCCTTGACATTCTCAATGGTGTC---ACTGGGATCCACTTCCAGGGTGATGGTCTTGCCT 11268
Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || |||||||| |||| ||||||
Sbjct 11267 GTCAGGGTCTTCACAAAGATCTGCAT 11242
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1152056069667283
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |