Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq97228 120 7e-22 seq75922 114 3e-20 seq66268 107 4e-18 seq7954 105 2e-17 seq117227 100 7e-16 seq7963 96.9 8e-15 seq66478 91.5 3e-13 >seq97228 Length=228612 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | ||||||||||| || ||||| ||||| |||||||| || | ||||| | Sbjct 211783 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGG 211724 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || |||||||| ||||| ||||| || | | |||||||| Sbjct 211723 CCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCT 211664 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | |||| |||| || || || || || || Sbjct 211663 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 211604 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| ||| | || ||||||||||| | |||||| || Sbjct 211603 ATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCATCTT 211563 >seq75922 Length=371470 Score = 114 bits (126), Expect = 3e-20 Identities = 166/233 (71%), Gaps = 11/233 (5%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||| || || || || |||||||| |||||||||||||| | | ||| Sbjct 193731 CCTCAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGT 193790 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCG-----CCGAG 151997 | |||||||| || || ||||| ||||| |||||||| ||||| | | | Sbjct 193791 GCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCGGGGAGAGGGGG 193850 Query 151998 ATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCT 152054 || || ||||| || || || || |||||| |||| | | ||| ||| ||| Sbjct 193851 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGAGTC---ACTGGGCTCC 193907 Query 152055 ACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || || || |||| || || ||||||| ||||| ||||||||| Sbjct 193908 ACTTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCATGAAGATCTGCATTTT 193960 >seq66268 Length=907216 Score = 107 bits (118), Expect = 4e-18 Identities = 152/210 (72%), Gaps = 8/210 (4%) Strand=Plus/Minus Query 151896 ACAAGATG-AAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 || ||||| |||| | ||| |||| |||| |||||| || | | ||| | ||||| || Sbjct 480605 ACCAGATGCAAGA-TGGACCCTTTCTGGACGTTGTAGTCCGACAGAGTGCCGCCATCCTC 480547 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || || || || || || ||||||||||| || | ||| |||||||| ||||| Sbjct 480546 CAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGCTCAGGTAGGATGCCTTCCTTGTCTTG 480487 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGT 152071 || || |||||| |||| | | |||| ||| ||| || |||||||| || || Sbjct 480486 GATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGT 480430 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 |||||||| || ||||||||||||| ||| Sbjct 480429 CTTGCCCGTCAGGGTCTTCACGAAGATCTG 480400 >seq7954 Length=808569 Score = 105 bits (116), Expect = 2e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | ||||||||||| || ||||| ||||| ||| |||| || | ||||| | Sbjct 793859 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGG 793800 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || |||||||| ||||| ||||| || | | ||||||||| Sbjct 793799 CCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCC 793740 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || | | | |||| ||||||| || || || || || Sbjct 793739 TTATCCTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTG 793680 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || | |||||||| || | || ||| || Sbjct 793679 ATGGTTTTCCCTGTAAAGGTCTTCACAAAAATCTCCATCTT 793639 >seq117227 Length=121535 Score = 100 bits (110), Expect = 7e-16 Identities = 156/222 (70%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | ||||||||||| || ||||| ||||| |||||||| || | ||||| | Sbjct 79503 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAG 79444 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || | || ||||| |||||||||| || | | ||||||||| Sbjct 79443 CCATCTTCCAGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGGAATTCCTTCC 79384 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | |||| |||| || || || | || || Sbjct 79383 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGTG 79324 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 || ||||| || || || ||| ||||||| | ||| || ||| Sbjct 79323 ATGGTTTTCCCTGTAAG-GTCCTCACGAAAATCTGAATCTTA 79283 >seq7963 Length=681008 Score = 96.9 bits (106), Expect = 8e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||| || | || || |||||||| |||||||||||||| | | ||| Sbjct 60888 CCTCAGACGGAGGACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGT 60947 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||||||||| || | ||| ||||| |||||||||||||||| | ||| || Sbjct 60948 GCGGCCATCTTCTAGCTGCTTGCNGGCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCC 61007 Query 152003 TTCCTTTTCTTGAATTTT 152020 ||||| || || || || Sbjct 61008 CTCCTTATCCTGGATCTT 61025 >seq66478 Length=146994 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/227 (69%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | || ||| || || || || |||||||| ||||||||||| || | | ||| Sbjct 11234 CTCAGACGGAAGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTG 11175 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||| || || || || ||||| || | ||||||||| | | ||| | Sbjct 11174 CAGCCATCTTTCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCC 11115 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || || || || || |||||| |||| | | |||| ||| ||| || || Sbjct 11114 TCTTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCN 11058 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || ||||| || || ||||||| ||||| | |||||| Sbjct 11057 AGGGTGATGGTCTTGCCGGTCAGGGTCTTCATGAAGATTTTCATTTT 11011 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || || || |||||||| ||||||||||| || | | ||| | |||||||| || Sbjct 11444 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCCAGCTGC 11385 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| || | ||||||||| | | ||| | || || | || || || Sbjct 11384 TTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGGATCTTG 11325 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCC 152078 |||||| |||| | | |||| ||| || ||||| || || || || ||||| Sbjct 11324 GCCTTGACATTCTCAATGGTGTC---ACTGGGATCCACTTCCAGGGTGATGGTCTTGCCT 11268 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 || || |||||||| |||| |||||| Sbjct 11267 GTCAGGGTCTTCACAAAGATCTGCAT 11242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152056069667283