Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq97228 141 2e-28
seq66268 138 2e-27
seq75922 131 4e-25
seq66478 120 6e-22
seq117227 113 9e-20
seq27123 102 2e-16
seq75927 98.7 2e-15
seq7963 98.7 2e-15
seq117011 89.7 1e-12
seq108018 89.7 1e-12
seq78627 89.7 1e-12
seq27479 89.7 1e-12
seq7994 89.7 1e-12
seq97151 87.8 4e-12
seq35323 84.2 5e-11
>seq97228
Length=228612
Score = 141 bits (156), Expect = 2e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || | | || ||||| | ||| || ||||| |||||||||||||
Sbjct 211793 ACCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 211734
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| || |||||||| || || || || || || ||||||| | ||| || ||| ||
Sbjct 211733 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGG 211674
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || || || || |||||||| || ||||| | || ||||||||||| | ||| ||
Sbjct 211673 AATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 211614
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
||||| ||||| || || ||| | | ||||| ||||| |||||||| ||
Sbjct 211613 CTCGAGCGTGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCATCTT 211563
>seq66268
Length=907216
Score = 138 bits (152), Expect = 2e-27
Identities = 165/224 (74%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||||| ||||| | | |||||||| || || |||| |||| ||||||||| |
Sbjct 480623 CCACCACTCAGGCAAGGCACCAGATGCAAGATGGACCCTTTCTGGACGTTGTAGTCCGAC 480564
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||| ||||||||| || || || || ||||| |||| | || || ||| |
Sbjct 480563 AGAGTGCCGCCATCCTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGCTCAGGTAGG 480504
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || ||||||||||||||||| || || || | || || ||||| | |||||
Sbjct 480503 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 480444
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096
|| |||||||| ||||| ||||||| ||||| ||||| |||||
Sbjct 480443 TCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTG 480400
>seq75922
Length=371470
Score = 131 bits (144), Expect = 4e-25
Identities = 170/235 (72%), Gaps = 5/235 (2%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| | ||| || || ||||| || | ||| ||||| ||||||||||| |||| |
Sbjct 193726 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 193785
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC-----AC 282987
|| ||||||||||| || || || || ||||||||||||| | ||||||||
Sbjct 193786 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCGGGGAGA 193845
Query 282988 CCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTT 283047
|| || |||||||| || |||||||| || || || | || || | ||| | |
Sbjct 193846 GGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGAGTCACTGGGCT 193905
Query 283048 CGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
| ||||| || ||||| ||||| | |||| ||||| | ||| |||||||||||
Sbjct 193906 CCACTTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCATGAAGATCTGCATTTT 193960
>seq66478
Length=146994
Score = 120 bits (132), Expect = 6e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
||||| |||||||||||||||| ||| |||| |||||| || || || || || ||||||
Sbjct 11432 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCCAGCTGCTTGCCAGCAAAG 11373
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|| | || || |||||| || || |||| || | |||||||| || || || |
Sbjct 11372 ATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGGATCTTGGCCTTGACATTC 11313
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
|| || ||||| | || ||||| || ||||| ||||| || |||| ||||| ||
Sbjct 11312 TCAATGGTGTCACTGGGATCCACTTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACA 11253
Query 283089 AATATCTGCAT 283099
|| ||||||||
Sbjct 11252 AAGATCTGCAT 11242
Score = 118 bits (130), Expect = 2e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| | ||| || | ||||| || | ||| ||||| |||||||||||||||| |
Sbjct 11240 CCACCTCTCAGACGGAAGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 11181
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||| |||||| | || || || || |||||||| | || || |||||| ||
Sbjct 11180 AGAGTGCAGCCATCTTTCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 11121
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||| || || |||||||| || || || | || || ||||| | || ||
Sbjct 11120 ATGTCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 11061
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| || ||||| ||||| || |||| ||||| | ||| || | ||||||
Sbjct 11060 TCNAGGGTGATGGTCTTGCCGGTCAGGGTCTTCATGAAGATTTTCATTTT 11011
>seq117227
Length=121535
Score = 113 bits (124), Expect = 9e-20
Identities = 153/212 (72%), Gaps = 1/212 (0%)
Strand=Plus/Minus
Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950
|| ||||| | ||| || ||||| ||||||||||||| | || | |||||| ||
Sbjct 79494 ACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAGCCATCTTCC 79435
Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010
|| || || | |||||||||| | || | ||| ||||| || ||||| || |||
Sbjct 79434 AGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGGAATTCCTTCCTTATCCTGG 79375
Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070
||||| || ||||| | || ||||||||||| | ||| || | ||| ||||| || ||
Sbjct 79374 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGTGATGGTTTTC 79315
Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| || || ||| | ||||| ||||| || ||
Sbjct 79314 CCTGT-AAGGTCCTCACGAAAATCTGAATCTT 79284
>seq27123
Length=1658509
Score = 102 bits (112), Expect = 2e-16
Identities = 164/231 (71%), Gaps = 5/231 (2%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||||| |||||| || ||||| || || || ||||| ||||||||||||||||
Sbjct 191245 CCACCACACAGGCGCAGCACCAGGTGCAAGGTAGACTCTTTCTGGATGTTGTAGTCAGAC 191304
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || |||||||||| || | || | | |||| | || | || |||||| ||
Sbjct 191305 AGGGTATGGCCATCCTCCAGCT-CTTGCTGACAAATACCAGCCTCTGCTGGTCAGGTGGG 191363
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC-CGAAGCTTCGAC 283051
|| || || |||||||||||||| || || | | | ||| ||||| | ||| || ||
Sbjct 191364 ATGCCTTCTTTGTCTTGGATCTTAGCCTTGGCATTCTTGATGGTGTCGCTGAGC-TCCAC 191422
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
| ||||||| ||||| | |||| || | || || |||||||| ||
Sbjct 191423 --CTGGAGTGATGGTCTTGTCTGTCAGGGTTGTCACCAAGATCTGCATGTT 191471
>seq75927
Length=353701
Score = 98.7 bits (108), Expect = 2e-15
Identities = 57/59 (97%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 159006 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 158948
>seq7963
Length=681008
Score = 98.7 bits (108), Expect = 2e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| | ||| || || ||||| | | ||| ||||| ||||||||||| |||| |
Sbjct 60883 CCACCCCTCAGACGGAGGACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 60942
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||||||||| ||||| || || | ||||||||| | | || ||||| ||
Sbjct 60943 AGAGTGCGGCCATCTTCTAGCTGCTTGCNGGCAAAGATGAGCCTCTGCTGGTCCGGGGGG 61002
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTT 283021
|| |||||||| || |||||||| || ||
Sbjct 61003 ATGCCCTCCTTATCCTGGATCTTGGCCTT 61031
>seq117011
Length=451335
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 235992 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 236050
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 277587 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 277529
>seq108018
Length=242351
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 191622 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 191680
>seq78627
Length=1950313
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 538565 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 538507
>seq27479
Length=274127
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 32402 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 32460
>seq7994
Length=453558
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 9152 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 9210
>seq97151
Length=436015
Score = 87.8 bits (96), Expect = 4e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054
||| ||||||||||||||||| || || || | ||||| ||||| | ||||| ||
Sbjct 143198 ACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTC 143139
Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|||||||| ||||| ||||||| ||||| || || |||||||| ||
Sbjct 143138 AAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGTT 143091
>seq35323
Length=73809
Score = 84.2 bits (92), Expect = 5e-11
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
|||||||||||| |||||||| ||||||||||| ||| |||||||||| |||||||||
Sbjct 129 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGANACCGGGGTTCGATTCCCCGA 72
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1045138247393942
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