Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq97228 141 2e-28 seq66268 138 2e-27 seq75922 131 4e-25 seq66478 120 6e-22 seq117227 113 9e-20 seq27123 102 2e-16 seq75927 98.7 2e-15 seq7963 98.7 2e-15 seq117011 89.7 1e-12 seq108018 89.7 1e-12 seq78627 89.7 1e-12 seq27479 89.7 1e-12 seq7994 89.7 1e-12 seq97151 87.8 4e-12 seq35323 84.2 5e-11 >seq97228 Length=228612 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || | | || ||||| | ||| || ||||| ||||||||||||| Sbjct 211793 ACCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 211734 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || |||||||| || || || || || || ||||||| | ||| || ||| || Sbjct 211733 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGG 211674 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || || || || |||||||| || ||||| | || ||||||||||| | ||| || Sbjct 211673 AATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 211614 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| || || ||| | | ||||| ||||| |||||||| || Sbjct 211613 CTCGAGCGTGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCATCTT 211563 >seq66268 Length=907216 Score = 138 bits (152), Expect = 2e-27 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||| ||||| | | |||||||| || || |||| |||| ||||||||| | Sbjct 480623 CCACCACTCAGGCAAGGCACCAGATGCAAGATGGACCCTTTCTGGACGTTGTAGTCCGAC 480564 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||| ||||||||| || || || || ||||| |||| | || || ||| | Sbjct 480563 AGAGTGCCGCCATCCTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGCTCAGGTAGG 480504 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| || || || | || || ||||| | ||||| Sbjct 480503 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 480444 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096 || |||||||| ||||| ||||||| ||||| ||||| ||||| Sbjct 480443 TCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTG 480400 >seq75922 Length=371470 Score = 131 bits (144), Expect = 4e-25 Identities = 170/235 (72%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||| || || ||||| || | ||| ||||| ||||||||||| |||| | Sbjct 193726 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 193785 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC-----AC 282987 || ||||||||||| || || || || ||||||||||||| | |||||||| Sbjct 193786 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCGGGGAGA 193845 Query 282988 CCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTT 283047 || || |||||||| || |||||||| || || || | || || | ||| | | Sbjct 193846 GGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGAGTCACTGGGCT 193905 Query 283048 CGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 | ||||| || ||||| ||||| | |||| ||||| | ||| ||||||||||| Sbjct 193906 CCACTTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCATGAAGATCTGCATTTT 193960 >seq66478 Length=146994 Score = 120 bits (132), Expect = 6e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| |||||||||||||||| ||| |||| |||||| || || || || || |||||| Sbjct 11432 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCCAGCTGCTTGCCAGCAAAG 11373 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || || |||||| || || |||| || | |||||||| || || || | Sbjct 11372 ATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGGATCTTGGCCTTGACATTC 11313 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| | || ||||| || ||||| ||||| || |||| ||||| || Sbjct 11312 TCAATGGTGTCACTGGGATCCACTTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACA 11253 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 11252 AAGATCTGCAT 11242 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||| || | ||||| || | ||| ||||| |||||||||||||||| | Sbjct 11240 CCACCTCTCAGACGGAAGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 11181 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||| |||||| | || || || || |||||||| | || || |||||| || Sbjct 11180 AGAGTGCAGCCATCTTTCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 11121 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||| || || |||||||| || || || | || || ||||| | || || Sbjct 11120 ATGTCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 11061 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||| ||||| || |||| ||||| | ||| || | |||||| Sbjct 11060 TCNAGGGTGATGGTCTTGCCGGTCAGGGTCTTCATGAAGATTTTCATTTT 11011 >seq117227 Length=121535 Score = 113 bits (124), Expect = 9e-20 Identities = 153/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 || ||||| | ||| || ||||| ||||||||||||| | || | |||||| || Sbjct 79494 ACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAGCCATCTTCC 79435 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 || || || | |||||||||| | || | ||| ||||| || ||||| || ||| Sbjct 79434 AGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGGAATTCCTTCCTTATCCTGG 79375 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| || ||||| | || ||||||||||| | ||| || | ||| ||||| || || Sbjct 79374 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGTGATGGTTTTC 79315 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || || ||| | ||||| ||||| || || Sbjct 79314 CCTGT-AAGGTCCTCACGAAAATCTGAATCTT 79284 >seq27123 Length=1658509 Score = 102 bits (112), Expect = 2e-16 Identities = 164/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||| |||||| || ||||| || || || ||||| |||||||||||||||| Sbjct 191245 CCACCACACAGGCGCAGCACCAGGTGCAAGGTAGACTCTTTCTGGATGTTGTAGTCAGAC 191304 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || |||||||||| || | || | | |||| | || | || |||||| || Sbjct 191305 AGGGTATGGCCATCCTCCAGCT-CTTGCTGACAAATACCAGCCTCTGCTGGTCAGGTGGG 191363 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC-CGAAGCTTCGAC 283051 || || || |||||||||||||| || || | | | ||| ||||| | ||| || || Sbjct 191364 ATGCCTTCTTTGTCTTGGATCTTAGCCTTGGCATTCTTGATGGTGTCGCTGAGC-TCCAC 191422 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 | ||||||| ||||| | |||| || | || || |||||||| || Sbjct 191423 --CTGGAGTGATGGTCTTGTCTGTCAGGGTTGTCACCAAGATCTGCATGTT 191471 >seq75927 Length=353701 Score = 98.7 bits (108), Expect = 2e-15 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 159006 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 158948 >seq7963 Length=681008 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||| || || ||||| | | ||| ||||| ||||||||||| |||| | Sbjct 60883 CCACCCCTCAGACGGAGGACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 60942 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| ||||| || || | ||||||||| | | || ||||| || Sbjct 60943 AGAGTGCGGCCATCTTCTAGCTGCTTGCNGGCAAAGATGAGCCTCTGCTGGTCCGGGGGG 61002 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTT 283021 || |||||||| || |||||||| || || Sbjct 61003 ATGCCCTCCTTATCCTGGATCTTGGCCTT 61031 >seq117011 Length=451335 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 235992 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 236050 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 277587 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 277529 >seq108018 Length=242351 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 191622 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 191680 >seq78627 Length=1950313 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 538565 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 538507 >seq27479 Length=274127 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 32402 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 32460 >seq7994 Length=453558 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 9152 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 9210 >seq97151 Length=436015 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 ||| ||||||||||||||||| || || || | ||||| ||||| | ||||| || Sbjct 143198 ACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTC 143139 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 |||||||| ||||| ||||||| ||||| || || |||||||| || Sbjct 143138 AAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGTT 143091 >seq35323 Length=73809 Score = 84.2 bits (92), Expect = 5e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||| |||||||| ||||||||||| ||| |||||||||| ||||||||| Sbjct 129 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGANACCGGGGTTCGATTCCCCGA 72 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045138247393942